HOMD ::Species:Leptotrichia buccalis

Species: Leptotrichia buccalis (HMT-563)

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Leptotrichia; Leptotrichia buccalis Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-563: Body Sites Data | HMT-563: Taxon Description | Life Page: Leptotrichia buccalis

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

Notes:
reads equally close to L. buccalis and L. sp. HMT 225 were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.340	0.639	0.026	0.038	0.015	0.027	0.023	0.017	0.005	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.132	2.236	0.023	0.095	0.047	0.071	0.036	0.049	0.017	0.000
Stdev	0.610	1.052	0.153	0.102	0.038	0.063	0.091	0.036	0.009	0.000
Prev(%)	59.740	61.039	24.675	49.351	28.571	31.169	37.662	42.857	25.974	0.000

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.355	0.583	0.015	0.056	0.020	0.047	0.037	0.014	0.008	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.924	1.713	0.019	0.190	0.065	0.137	0.071	0.055	0.036	0.000
Stdev	0.913	1.132	0.091	0.109	0.052	0.118	0.121	0.029	0.019	0.000
Prev(%)	52.703	54.730	11.486	45.270	24.324	35.135	31.081	27.027	19.595	0.000

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.271	0.407	0.024	0.042	0.030	0.049	0.036	0.000	0.000	0.000	0.000	0.007	0.044	0.009	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.880	1.370	0.015	0.108	0.079	0.135	0.082	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.608	0.964	0.188	0.123	0.070	0.129	0.123	0.000	0.000	0.000	0.000	0.054	0.338	0.080	0.000	0.000	0.000	0.000
Prev(%)	47.682	50.331	17.483	36.986	45.638	37.692	35.417	0.000	0.000	0.000	0.000	3.683	7.471	3.687	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

Notes:
Reads equidistant to HMT-225 and HMT-563 were assigned to each taxon in proportion to the abundance of HMT-225 and HMT-563 individually at this body site (SUBP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.423	0.551	0.066	0.119	0.028	0.051	0.037	0.022	0.026	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.150	1.728	0.054	0.246	0.077	0.147	0.126	0.059	0.078	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.997	1.148	0.439	0.369	0.085	0.144	0.100	0.063	0.059	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	59.012	62.683	17.284	42.680	23.274	39.583	34.891	31.873	41.606	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

Notes:
Reads equally close to HMT 225 and 563 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.562	1.389	0.099	0.146	0.096	0.012	0.022	0.020	0.019	0.000
10^thp	0.000	0.002	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	1.348	4.950	0.016	0.171	0.048	0.020	0.051	0.045	0.030	0.000
Stdev	1.789	3.175	0.459	0.574	0.437	0.030	0.043	0.061	0.075	0.000
Prev(%)	68.919	91.176	55.814	71.429	60.714	52.000	69.697	58.065	50.000	0.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.092	0.237	0.252	0.004	0.042	0.000	0.001	0.001	0.015	0.005	0.002	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.377	0.690	0.838	0.000	0.035	0.000	0.003	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.162	0.549	0.530	0.015	0.247	0.000	0.004	0.005	0.072	0.058	0.028	0.000	0.000	0.000	0.000	0.000	0.000	0.008
Prev(%)	41.667	49.242	50.000	5.882	14.096	0.000	12.500	6.250	8.000	8.685	0.450	0.000	0.000	0.000	0.000	0.000	0.000	0.182

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