HOMD Banner
Taxonomy: V4.0   |  16S rRNA RefSeq: V16.02   |  Genomic RefSeq: V11.01
Species: Lactococcus lactis (HMT-804)
Download Options
Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus; Lactococcus lactis
Oral:
SUBP-- Subgingival Plaque SUPP -- Supragingival Plaque PERIO -- Periodontal AKE -- Attached Keratinized Gingiva BMU -- Buccal Mucosa
HPA -- Hard Palate SAL -- Saliva THR -- Throat PTO -- Palatine Tonsils TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease RRC -- R_Retroauricular Crease LAF -- L_Antecubital Fossa RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus MVA -- Mid Vagina PFO -- Posterior Fornix
Gut:
STO -- Stool
Oral:
SUBP-- Subgingival Plaque
SUPP -- Supragingival Plaque
PERIO -- Periodontal
AKE -- Attached Keratinized Gingiva
BMU -- Buccal Mucosa
HPA -- Hard Palate
SAL -- Saliva
THR -- Throat
PTO -- Palatine Tonsils
TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease
RRC -- R_Retroauricular Crease
LAF -- L_Antecubital Fossa
RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus
MVA -- Mid Vagina
PFO -- Posterior Fornix
Gut:
STO -- Stool

Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)0.0000.0000.0000.0000.0000.0000.0000.0000.0000.2160.0410.0630.1370.1180.0000.0000.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0460.0140.0150.2610.1790.0000.0000.0000.000
Stdev0.0000.0000.0000.0000.0000.0000.0000.0000.0003.4330.4000.7360.4530.5330.0000.0000.0000.000
Prev(%)0.0000.0000.0000.0000.0000.0000.0000.0000.00019.00014.08014.73129.31022.5810.0000.0000.0000.000

HMP 16S RefSeq (V3-V5) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)0.0330.0000.0000.0000.0000.0170.0000.0000.0000.0580.0580.1010.1730.1350.0000.0000.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0930.0370.0180.3170.2660.0000.0000.0000.000
Stdev0.6370.0000.0000.0000.0000.1200.0000.0000.0000.3890.4981.3730.7070.6290.0000.0000.0000.000
Prev(%)2.7160.0000.0000.0000.0009.2260.0000.0000.00020.69013.69411.72831.72429.3330.0000.0000.0000.000

Dewhirst (35x9) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANA
Avg (%)0.0000.0000.0000.0000.0000.0010.0000.0000.0000.005
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.005
Stdev0.0010.0000.0020.0030.0000.0040.0020.0010.0000.017
Prev(%)5.4052.9414.6512.8573.5718.0006.0613.2262.50015.000

HMP Metaphlan (not published)
No Notes
SUBPSUPPPERIOAKEBMUHPASALTHRPTOTDOANALRCRRCRAFVINMVAPFOSTO
Avg (%)0.0000.0000.0000.0000.0030.0000.0000.0000.0000.0000.0110.0020.0010.0000.0000.0000.0000.002
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
Stdev0.0000.0010.0000.0000.0390.0000.0000.0000.0000.0030.1400.0080.0040.0000.0000.0000.0000.011
Prev(%)0.0000.5050.0000.0001.0640.0000.0000.0000.0000.9391.8024.1673.1250.0000.0000.0000.0003.455

Eren V1-V3 www.pnas.org
No Notes

Eren V3-V5 www.pnas.org
No Notes