HOMD ::species::Haemophilus sp. HMT-036

Species: Haemophilus sp. HMT-036 (HMT-036)

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus sp. HMT-036

LINKS: Ecology Home | HMT-036: Body Sites Data | HMT-036: Taxon Description | Life Page: Haemophilus sp. HMT-036

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

** View Notes (mouse over) **

Notes:
Reads equidistant to HMT-036 and HMT-851 were assigned to each taxon in proportion to the abundance of HMT-036 and HMT-851 individually at these body sites (AKE, BMU).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.000	0.129	0.063	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.292	0.098	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.000	0.000	0.407	0.300	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	0.000	0.000	44.056	25.342	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

** View Notes (mouse over) **

Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.

Dewhirst (35x9) (not published)

** View Notes (mouse over) **

Notes:
Reads equally close to HMT 036 and 851 were assigned half to each taxon.

Reads equally close to HMT 036, 851, and 908 were assigned one-third to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.054	0.030	2.418	0.570	0.258	0.012	0.063	0.048	0.082	0.005
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.028	0.084	6.419	0.842	0.536	0.053	0.125	0.200	0.156	0.000
Stdev	0.232	0.076	5.664	1.968	0.711	0.022	0.187	0.100	0.247	0.021
Prev(%)	55.405	41.176	76.744	85.714	75.000	52.000	78.788	51.613	50.000	5.000

HMP Metaphlan (not published)

No Notes

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.016	0.011	1.306	0.334	0.082	0.085	0.026	0.022	0.004	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.047	0.024	4.193	0.805	0.246	0.216	0.094	0.063	0.000	0.000
Stdev	0.047	0.044	2.406	0.713	0.179	0.217	0.057	0.052	0.016	0.000
Prev(%)	20.779	19.481	80.519	76.623	55.844	48.052	29.870	35.065	7.792	0.000

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.033	0.030	1.469	0.605	0.138	0.190	0.117	0.177	0.012	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.068	0.039	3.669	1.619	0.334	0.418	0.163	0.579	0.044	0.000
Stdev	0.127	0.135	4.588	1.513	0.466	0.540	0.612	0.519	0.034	0.000
Prev(%)	19.595	16.892	50.676	50.000	31.081	48.649	38.514	33.108	19.595	0.000

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