HOMD ::species::Haemophilus parahaemolyticus

Species: Haemophilus parahaemolyticus (HMT-945)

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus parahaemolyticus

LINKS: Ecology Home | HMT-945: Body Sites Data | HMT-945: Taxon Description | Life Page: Haemophilus parahaemolyticus

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.000	0.347	0.124	0.116	0.099	0.116	0.158	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.922	0.194	0.294	0.176	0.186	0.355	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.000	0.000	1.111	0.377	0.393	0.392	0.519	0.529	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	0.000	0.000	44.056	47.945	46.980	34.615	38.690	44.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

** View Notes (mouse over) **

Notes:
Reads equidistant to HMT-035 and HMT-945 were assigned to each taxon in proportion to the abundance of HMT-035 and HMT-945 individually at these sites (AKE,BMU,HPA,SAL,SUBP,SUPP).

Because HMT-035 is not present individually, all equidistant reads were assigned to HMT-945 at this these sites (PTO,THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.070	0.084	3.317	2.015	1.279	0.569	1.699	1.812	0.000	0.033	0.097	0.190	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.133	0.118	11.349	5.545	3.309	1.618	3.081	5.013	0.000	0.049	0.039	0.025	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.233	0.406	7.849	4.868	3.212	1.123	5.979	4.573	0.000	0.161	0.913	1.816	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	48.148	47.561	67.901	74.194	71.867	73.214	65.732	78.102	0.000	15.709	16.879	13.889	0.000	0.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

** View Notes (mouse over) **

Notes:
Reads equally close to HMT 035 and 945 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.006	0.006	0.382	0.120	0.107	0.037	0.238	0.474	0.017	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.011	0.006	0.358	0.259	0.187	0.041	1.000	0.359	0.012	0.000
Stdev	0.023	0.031	1.813	0.361	0.360	0.131	0.514	1.859	0.080	0.000
Prev(%)	28.378	17.647	53.488	62.857	53.571	42.000	60.606	70.968	42.500	0.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.003	0.013	0.000	0.052	0.512	0.490	0.300	0.371	0.271	0.005	0.001	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.490	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.010	0.000	0.008	1.025	0.490	1.136	0.750	0.532	0.010	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.014	0.076	0.000	0.208	2.267	0.000	0.562	1.125	0.590	0.024	0.013	0.002	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	4.167	10.859	0.000	11.765	41.755	100.000	25.000	25.000	48.000	11.737	0.901	4.167	0.000	0.000	0.000	0.000	0.000	0.000

Eren V1-V3 www.pnas.org

** View Notes (mouse over) **

Notes:
reads equally close to H. parahaemolyticus and H. paraphrohaemolyticus were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.007	0.002	0.490	0.074	0.113	0.042	0.042	0.091	0.003	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.011	0.008	1.446	0.165	0.194	0.091	0.105	0.233	0.000	0.000
Stdev	0.037	0.007	1.076	0.170	0.547	0.135	0.118	0.268	0.012	0.000
Prev(%)	16.883	15.584	57.143	55.844	53.247	31.169	32.468	38.961	9.091	0.000

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.041	0.046	0.851	0.581	0.465	0.386	0.546	1.051	0.021	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.121	0.080	2.676	1.108	0.915	0.960	1.093	3.328	0.048	0.000
Stdev	0.129	0.221	2.483	1.693	1.840	1.087	1.538	2.350	0.071	0.000
Prev(%)	25.676	27.027	52.027	62.838	55.405	61.486	55.405	70.270	23.649	0.000

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