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Taxonomy: V4.0   |  16S rRNA RefSeq: V16.02   |  Genomic RefSeq: V11.01
Species: Haemophilus parahaemolyticus (HMT-945)
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Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus parahaemolyticus
Oral:
SUBP-- Subgingival Plaque SUPP -- Supragingival Plaque PERIO -- Periodontal AKE -- Attached Keratinized Gingiva BMU -- Buccal Mucosa
HPA -- Hard Palate SAL -- Saliva THR -- Throat PTO -- Palatine Tonsils TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease RRC -- R_Retroauricular Crease LAF -- L_Antecubital Fossa RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus MVA -- Mid Vagina PFO -- Posterior Fornix
Gut:
STO -- Stool
Oral:
SUBP-- Subgingival Plaque
SUPP -- Supragingival Plaque
PERIO -- Periodontal
AKE -- Attached Keratinized Gingiva
BMU -- Buccal Mucosa
HPA -- Hard Palate
SAL -- Saliva
THR -- Throat
PTO -- Palatine Tonsils
TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease
RRC -- R_Retroauricular Crease
LAF -- L_Antecubital Fossa
RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus
MVA -- Mid Vagina
PFO -- Posterior Fornix
Gut:
STO -- Stool

Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)0.0000.0000.3470.1240.1160.0990.1160.1580.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0000.0000.9220.1940.2940.1760.1860.3550.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
Stdev0.0000.0001.1110.3770.3930.3920.5190.5290.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
Prev(%)0.0000.00044.05647.94546.98034.61538.69044.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000

HMP 16S RefSeq (V3-V5) (not published)
** View Notes (mouse over) **
Notes:
Reads equidistant to HMT-035 and HMT-945 were assigned to each taxon in proportion to the abundance of HMT-035 and HMT-945 individually at these sites (AKE,BMU,HPA,SAL,SUBP,SUPP).

Because HMT-035 is not present individually, all equidistant reads were assigned to HMT-945 at this these sites (PTO,THR).

SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)0.0700.0843.3172.0151.2790.5691.6991.8120.0000.0330.0970.1900.0000.0000.0000.0000.0000.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.1330.11811.3495.5453.3091.6183.0815.0130.0000.0490.0390.0250.0000.0000.0000.0000.0000.000
Stdev0.2330.4067.8494.8683.2121.1235.9794.5730.0000.1610.9131.8160.0000.0000.0000.0000.0000.000
Prev(%)48.14847.56167.90174.19471.86773.21465.73278.1020.00015.70916.87913.8890.0000.0000.0000.0000.0000.000

Dewhirst (35x9) (not published)
** View Notes (mouse over) **
Notes:
Reads equally close to HMT 035 and 945 were assigned half to each taxon.



SUBPSUPPAKEBMUHPASALTHRPTOTDOANA
Avg (%)0.0060.0060.3820.1200.1070.0370.2380.4740.0170.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0110.0060.3580.2590.1870.0411.0000.3590.0120.000
Stdev0.0230.0311.8130.3610.3600.1310.5141.8590.0800.000
Prev(%)28.37817.64753.48862.85753.57142.00060.60670.96842.5000.000

HMP Metaphlan (not published)
No Notes
SUBPSUPPPERIOAKEBMUHPASALTHRPTOTDOANALRCRRCRAFVINMVAPFOSTO
Avg (%)0.0030.0130.0000.0520.5120.4900.3000.3710.2710.0050.0010.0000.0000.0000.0000.0000.0000.000
10thp0.0000.0000.0000.0000.0000.4900.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0000.0100.0000.0081.0250.4901.1360.7500.5320.0100.0000.0000.0000.0000.0000.0000.0000.000
Stdev0.0140.0760.0000.2082.2670.0000.5621.1250.5900.0240.0130.0020.0000.0000.0000.0000.0000.000
Prev(%)4.16710.8590.00011.76541.755100.00025.00025.00048.00011.7370.9014.1670.0000.0000.0000.0000.0000.000

Eren V1-V3 www.pnas.org
** View Notes (mouse over) **
Notes:
reads equally close to H. parahaemolyticus and H. paraphrohaemolyticus were assigned half to each taxon



SUBPSUPPAKEBMUHPASALTHRPTOTDOSTO
Avg (%)0.0070.0020.4900.0740.1130.0420.0420.0910.0030.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0110.0081.4460.1650.1940.0910.1050.2330.0000.000
Stdev0.0370.0071.0760.1700.5470.1350.1180.2680.0120.000
Prev(%)16.88315.58457.14355.84453.24731.16932.46838.9619.0910.000

Eren V3-V5 www.pnas.org
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOSTO
Avg (%)0.0410.0460.8510.5810.4650.3860.5461.0510.0210.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.1210.0802.6761.1080.9150.9601.0933.3280.0480.000
Stdev0.1290.2212.4831.6931.8401.0871.5382.3500.0710.000
Prev(%)25.67627.02752.02762.83855.40561.48655.40570.27023.6490.000