HOMD ::species::Haemophilus parahaemolyticus

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16S rRNA RefSeq: V15.22 Genomic RefSeq: V9.15

Species: Haemophilus parahaemolyticus

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Full Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus parahaemolyticus

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From: Segata et al.(2012)	No Notes

From: Eren et al.(2014) (V1-V3)

Notes:

reads equally close to H. parahaemolyticus and H. paraphrohaemolyticus were assigned half to each taxon

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	0.007	0.002	0.490	0.074	0.113	0.042	0.042	0.091	0.003	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.011	0.008	1.446	0.165	0.194	0.091	0.105	0.233	0.000	0.000
Stdev	0.037	0.007	1.076	0.170	0.547	0.135	0.118	0.268	0.012	0.000
Prev	16.883	15.584	57.143	55.844	53.247	31.169	32.468	38.961	9.091	0.000

From: Eren et al.(2014) (V3-V5)

No Notes

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	ST
Avg	0.041	0.046	0.851	0.581	0.465	0.386	0.546	1.051	0.021	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.121	0.080	2.676	1.108	0.915	0.960	1.093	3.328	0.048	0.000
Stdev	0.129	0.221	2.483	1.693	1.840	1.087	1.538	2.350	0.071	0.000
Prev	25.676	27.027	52.027	62.838	55.405	61.486	55.405	70.270	23.649	0.000

From: Dewhirst 35x9 data (not published yet)

Notes:

Reads equally close to HMT 035 and 945 were assigned half to each taxon.

percent abundance

	SubP	SupP	KG	BM	HP	SV	TH	PT	TD	NS
Avg	0.006	0.006	0.382	0.120	0.107	0.037	0.238	0.474	0.017	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.011	0.006	0.358	0.259	0.187	0.041	1.000	0.359	0.012	0.000
Stdev	0.023	0.031	1.813	0.361	0.360	0.131	0.514	1.859	0.080	0.000
Prev	42.857	17.647	63.889	61.765	53.571	44.444	60.606	70.968	35.294	0.000