HOMD ::species::Haemophilus haemolyticus

Species: Haemophilus haemolyticus (HMT-851)

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus haemolyticus

LINKS: Ecology Home | HMT-851: Body Sites Data | HMT-851: Taxon Description | Life Page: Haemophilus haemolyticus

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

** View Notes (mouse over) **

Notes:
Reads equidistant to HMT-036 and HMT-851 were assigned to each taxon in proportion to the abundance of HMT-036 and HMT-851 individually at these sites (AKE,BMU).

Some of the reads equidistant from these taxa (058-070-071-073-398-423-431-638-677-707-734-851) are included in HMT-851 because they are too close to differentiate at this site (AKE).

Reads equidistant to HMT-734 and HMT-851 were assigned to each taxon in proportion to the abundance of HMT-734 and HMT-851 individually at this body site (THR).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.046	0.000	2.107	0.872	0.169	0.184	0.160	0.129	0.000	0.000	0.026	0.025	0.096	0.071	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.017	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.086	0.000	5.910	2.755	0.431	0.485	0.182	0.215	0.000	0.000	0.026	0.042	0.291	0.218	0.000	0.000	0.000	0.000
Stdev	0.144	0.000	3.447	1.547	0.342	0.387	0.906	0.423	0.000	0.000	0.119	0.114	0.321	0.235	0.000	0.000	0.000	0.000
Prev(%)	39.735	0.000	98.601	82.192	75.168	64.615	53.869	52.667	0.000	0.000	15.805	23.229	29.310	29.954	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

** View Notes (mouse over) **

Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.

Dewhirst (35x9) (not published)

** View Notes (mouse over) **

Notes:
Reads equally close to HMT 036 and 851 were assigned half to each taxon.

Reads equally close to HMT 259 and 851 were assigned half to each taxon.

Reads equally close to HMT 036, 851, and 908 were assigned one-third to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.016	0.046	1.639	0.237	0.063	0.028	0.042	0.074	0.235	0.001
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.038	0.019	3.490	0.415	0.124	0.089	0.045	0.157	0.212	0.000
Stdev	0.056	0.216	4.504	0.614	0.104	0.067	0.140	0.182	1.052	0.003
Prev(%)	47.297	44.118	79.070	77.143	78.571	50.000	57.576	45.161	45.000	5.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.095	0.210	0.000	8.172	8.606	8.020	1.278	0.030	0.976	0.044	0.017	0.005	0.108	0.000	0.000	0.039	0.001	0.001
10^thp	0.000	0.000	0.000	0.248	0.090	8.020	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.238	0.625	0.000	26.910	21.875	8.020	3.416	0.100	1.746	0.105	0.000	0.021	0.000	0.000	0.000	0.133	0.000	0.000
Stdev	0.127	0.521	0.000	10.684	11.469	0.000	1.521	0.043	2.158	0.112	0.163	0.013	0.603	0.000	0.000	0.103	0.006	0.014
Prev(%)	66.667	72.727	0.000	94.118	94.149	100.000	75.000	43.750	80.000	52.347	3.153	12.500	6.250	0.000	0.000	14.286	1.010	0.364

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.014	0.007	0.558	0.259	0.069	0.068	0.116	0.099	0.006	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.010	0.027	1.478	0.867	0.146	0.138	0.104	0.094	0.000	0.000
Stdev	0.088	0.021	1.297	0.591	0.300	0.215	0.546	0.574	0.024	0.000
Prev(%)	10.390	14.286	58.442	59.740	29.870	32.468	35.065	29.870	9.091	0.000

Eren V3-V5 www.pnas.org

** View Notes (mouse over) **

Notes:
Reads equally close to H. haemolyticus and H. sp. HMT 908 were assigned half to each taxon.

Reads equally close to H. haemolyticus, H. sp. HMT 908, and Aggregatibacter sp. HMT 898 were assigned one-third to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.092	0.106	3.534	1.427	0.334	0.391	0.260	0.332	0.021	0.000
10^thp	0.000	0.000	0.173	0.033	0.000	0.010	0.000	0.000	0.000	0.000
90^thp	0.205	0.220	10.109	3.877	0.721	1.004	0.651	0.620	0.051	0.000
Stdev	0.260	0.330	4.592	2.094	0.582	0.463	0.705	0.928	0.043	0.000
Prev(%)	61.486	57.432	95.946	93.243	87.162	89.865	76.351	81.757	45.946	0.699

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