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Taxonomy: V4.0   |  16S rRNA RefSeq: V16.02   |  Genomic RefSeq: V11.01
Species: Haemophilus haemolyticus (HMT-851)
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Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus haemolyticus
Oral:
SUBP-- Subgingival Plaque SUPP -- Supragingival Plaque PERIO -- Periodontal AKE -- Attached Keratinized Gingiva BMU -- Buccal Mucosa
HPA -- Hard Palate SAL -- Saliva THR -- Throat PTO -- Palatine Tonsils TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease RRC -- R_Retroauricular Crease LAF -- L_Antecubital Fossa RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus MVA -- Mid Vagina PFO -- Posterior Fornix
Gut:
STO -- Stool
Oral:
SUBP-- Subgingival Plaque
SUPP -- Supragingival Plaque
PERIO -- Periodontal
AKE -- Attached Keratinized Gingiva
BMU -- Buccal Mucosa
HPA -- Hard Palate
SAL -- Saliva
THR -- Throat
PTO -- Palatine Tonsils
TDO -- Tongue Dorsum
Nasal:
ANA -- Anterior Nares
Skin:
LRC -- L_Retroauricular Crease
RRC -- R_Retroauricular Crease
LAF -- L_Antecubital Fossa
RAF -- R_Antecubital Fossa
Vaginal:
VIN -- Vaginal Introitus
MVA -- Mid Vagina
PFO -- Posterior Fornix
Gut:
STO -- Stool

Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
** View Notes (mouse over) **
Notes:
Reads equidistant to HMT-036 and HMT-851 were assigned to each taxon in proportion to the abundance of HMT-036 and HMT-851 individually at these sites (AKE,BMU).

Some of the reads equidistant from these taxa (058-070-071-073-398-423-431-638-677-707-734-851) are included in HMT-851 because they are too close to differentiate at this site (AKE).

Reads equidistant to HMT-734 and HMT-851 were assigned to each taxon in proportion to the abundance of HMT-734 and HMT-851 individually at this body site (THR).

SUBPSUPPAKEBMUHPASALTHRPTOTDOANALRCRRCLAFRAFVINMVAPFOSTO
Avg (%)0.0460.0002.1070.8720.1690.1840.1600.1290.0000.0000.0260.0250.0960.0710.0000.0000.0000.000
10thp0.0000.0000.0170.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0860.0005.9102.7550.4310.4850.1820.2150.0000.0000.0260.0420.2910.2180.0000.0000.0000.000
Stdev0.1440.0003.4471.5470.3420.3870.9060.4230.0000.0000.1190.1140.3210.2350.0000.0000.0000.000
Prev(%)39.7350.00098.60182.19275.16864.61553.86952.6670.0000.00015.80523.22929.31029.9540.0000.0000.0000.000

HMP 16S RefSeq (V3-V5) (not published)
** View Notes (mouse over) **
Notes:
No data – the v3v5 region of the 16S rRNA gene does not distinguish this species from its close relatives.


Dewhirst (35x9) (not published)
** View Notes (mouse over) **
Notes:
Reads equally close to HMT 036 and 851 were assigned half to each taxon.

Reads equally close to HMT 259 and 851 were assigned half to each taxon.

Reads equally close to HMT 036, 851, and 908 were assigned one-third to each taxon.



SUBPSUPPAKEBMUHPASALTHRPTOTDOANA
Avg (%)0.0160.0461.6390.2370.0630.0280.0420.0740.2350.001
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0380.0193.4900.4150.1240.0890.0450.1570.2120.000
Stdev0.0560.2164.5040.6140.1040.0670.1400.1821.0520.003
Prev(%)47.29744.11879.07077.14378.57150.00057.57645.16145.0005.000

HMP Metaphlan (not published)
No Notes
SUBPSUPPPERIOAKEBMUHPASALTHRPTOTDOANALRCRRCRAFVINMVAPFOSTO
Avg (%)0.0950.2100.0008.1728.6068.0201.2780.0300.9760.0440.0170.0050.1080.0000.0000.0390.0010.001
10thp0.0000.0000.0000.2480.0908.0200.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.2380.6250.00026.91021.8758.0203.4160.1001.7460.1050.0000.0210.0000.0000.0000.1330.0000.000
Stdev0.1270.5210.00010.68411.4690.0001.5210.0432.1580.1120.1630.0130.6030.0000.0000.1030.0060.014
Prev(%)66.66772.7270.00094.11894.149100.00075.00043.75080.00052.3473.15312.5006.2500.0000.00014.2861.0100.364

Eren V1-V3 www.pnas.org
No Notes
SUBPSUPPAKEBMUHPASALTHRPTOTDOSTO
Avg (%)0.0140.0070.5580.2590.0690.0680.1160.0990.0060.000
10thp0.0000.0000.0000.0000.0000.0000.0000.0000.0000.000
90thp0.0100.0271.4780.8670.1460.1380.1040.0940.0000.000
Stdev0.0880.0211.2970.5910.3000.2150.5460.5740.0240.000
Prev(%)10.39014.28658.44259.74029.87032.46835.06529.8709.0910.000

Eren V3-V5 www.pnas.org
** View Notes (mouse over) **
Notes:
Reads equally close to H. haemolyticus and H. sp. HMT 908 were assigned half to each taxon.

Reads equally close to H. haemolyticus, H. sp. HMT 908, and Aggregatibacter sp. HMT 898 were assigned one-third to each taxon.



SUBPSUPPAKEBMUHPASALTHRPTOTDOSTO
Avg (%)0.0920.1063.5341.4270.3340.3910.2600.3320.0210.000
10thp0.0000.0000.1730.0330.0000.0100.0000.0000.0000.000
90thp0.2050.22010.1093.8770.7211.0040.6510.6200.0510.000
Stdev0.2600.3304.5922.0940.5820.4630.7050.9280.0430.000
Prev(%)61.48657.43295.94693.24387.16289.86576.35181.75745.9460.699