HOMD ::species::Granulicatella elegans

Species: Granulicatella elegans (HMT-596)

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Granulicatella; Granulicatella elegans

LINKS: Ecology Home | HMT-596: Body Sites Data | HMT-596: Taxon Description | Life Page: Granulicatella elegans

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.060	0.045	2.109	0.989	0.885	0.350	0.144	0.179	0.020	0.068	0.021	0.026	0.132	0.104	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.100	0.099	5.656	3.314	2.897	0.762	0.377	0.326	0.048	0.108	0.050	0.027	0.348	0.214	0.000	0.000	0.000	0.000
Stdev	0.218	0.158	2.911	1.562	1.446	1.127	0.406	0.655	0.079	0.485	0.087	0.292	0.412	0.426	0.000	0.000	0.000	0.000
Prev(%)	41.060	44.371	82.517	77.397	77.852	56.154	45.238	54.667	32.258	24.333	20.115	18.697	31.034	23.041	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.057	0.059	3.522	1.644	1.711	0.244	0.243	0.266	0.017	0.046	0.142	0.122	0.200	0.233	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.114	0.125	8.549	5.116	4.773	0.678	0.567	0.562	0.041	0.096	0.068	0.075	0.368	0.600	0.000	0.000	0.000	0.000
Stdev	0.204	0.226	5.318	2.601	3.447	0.421	0.776	0.981	0.055	0.178	1.575	0.843	0.887	0.716	0.000	0.000	0.000	0.000
Prev(%)	44.691	46.098	81.975	77.916	77.494	66.964	52.960	55.474	27.494	26.820	22.293	20.988	25.517	32.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.080	0.051	1.426	0.226	0.307	0.143	0.056	0.141	0.036	0.004
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.098	0.133	3.704	0.496	0.856	0.396	0.135	0.381	0.078	0.003
Stdev	0.357	0.130	3.548	0.527	0.490	0.350	0.113	0.299	0.081	0.014
Prev(%)	58.108	55.882	76.744	88.571	85.714	86.000	84.848	83.871	80.000	10.000

HMP Metaphlan (not published)

No Notes

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.095	0.079	3.156	1.104	1.005	0.246	0.256	0.261	0.024	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.218	0.162	9.281	3.566	3.974	0.846	0.714	0.403	0.059	0.000
Stdev	0.341	0.294	4.167	1.782	1.657	0.409	0.691	0.797	0.066	0.000
Prev(%)	41.558	37.662	77.922	76.623	72.727	54.545	45.455	53.247	31.169	0.000

Eren V3-V5 www.pnas.org

** View Notes (mouse over) **

Notes:
Reads equally close to G. adiacens and G. elegans were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.266	0.338	1.213	0.813	1.370	0.803	0.871	0.781	1.569	0.002
10^thp	0.019	0.062	0.028	0.140	0.472	0.210	0.187	0.140	0.392	0.000
90^thp	0.546	0.626	3.280	1.884	2.385	1.667	1.630	1.579	3.259	0.000
Stdev	0.336	0.387	1.452	0.930	0.838	0.631	0.607	0.615	1.180	0.009
Prev(%)	92.568	98.649	95.270	99.324	99.324	99.324	100.000	98.649	100.000	7.692

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