HOMD ::Species:Fusobacterium periodonticum

Species: Fusobacterium periodonticum (HMT-201)

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium periodonticum Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-201: Body Sites Data | HMT-201: Taxon Description | Life Page: Fusobacterium periodonticum

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Eren V1-V3 www.pnas.org (data from healthy subjects)

Notes:
reads equally close to F. periodonticum and F. sp. HMT 370 were assigned half to each taxon

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.064	0.062	0.048	0.264	0.529	0.669	0.965	1.230	1.422	0.001
10^thp	0.000	0.000	0.000	0.000	0.027	0.035	0.031	0.069	0.039	0.000
90^thp	0.160	0.116	0.097	0.666	1.215	1.626	2.218	3.043	3.647	0.000
Stdev	0.145	0.194	0.118	0.450	0.578	0.638	1.112	1.160	1.422	0.003
Prev(%)	59.740	64.935	54.545	88.312	94.805	93.506	94.805	96.104	93.506	5.195

Eren V3-V5 www.pnas.org (data from healthy subjects)

Notes:
Reads equally close to F. hwasookii, F. periodonticum, and F. sp. HMT 370 were assigned one-third to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.308	0.393	0.397	1.694	3.031	4.947	4.979	6.947	8.126	0.001
10^thp	0.000	0.000	0.000	0.092	0.261	0.432	0.271	0.357	0.284	0.000
90^thp	0.504	0.821	1.051	3.933	6.939	11.295	12.036	16.359	18.612	0.000
Stdev	1.036	0.888	0.940	2.015	2.939	4.213	4.957	6.468	7.634	0.005
Prev(%)	72.973	80.405	75.000	95.270	96.622	98.649	96.622	96.622	98.649	2.797

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

Notes:
Because HMT-953 is not present individually, all equidistant reads were assigned to HMT-201 at this body site (ANA).

Reads equidistant to HMT-201 and HMT-202 were assigned to each taxon in proportion to the abundance of HMT-201 and HMT-202 individually at these sites (BMU,PTO).

Reads equidistant to HMT-201 and HMT-953 were assigned to each taxon in proportion to the abundance of HMT-201 and HMT-953 individually at these sites (SUBP,SUPP).

Some of the reads equidistant from these taxa (201-202-953) are included in HMT-201 because they are too close to differentiate at this site (SUPP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.282	0.325	0.354	1.390	2.512	2.800	4.016	5.302	5.098	0.063	0.123	0.024	0.222	0.261	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.035	0.110	0.224	0.098	0.361	0.232	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.705	0.794	0.890	3.233	6.761	7.235	9.680	11.844	12.993	0.123	0.051	0.034	0.268	0.583	0.000	0.000	0.000	0.000
Stdev	0.522	0.699	0.709	1.939	2.640	3.044	4.149	5.153	5.106	0.280	1.145	0.142	1.374	1.013	0.000	0.000	0.000	0.000
Prev(%)	82.119	87.417	83.217	93.151	95.302	95.385	94.643	97.333	98.065	33.667	21.552	21.530	24.713	28.111	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.258	0.365	0.737	2.570	4.749	4.762	5.880	7.190	7.796	0.241	0.457	0.475	1.413	1.223	0.000	0.000	0.000	0.029
10^thp	0.000	0.000	0.000	0.136	0.396	0.587	0.393	0.666	0.391	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.713	0.946	2.076	6.101	10.342	11.059	12.906	15.940	17.639	0.603	0.490	1.117	3.699	3.425	0.000	0.000	0.000	0.019
Stdev	0.523	0.712	1.616	3.176	4.235	4.657	5.182	6.196	6.756	0.665	1.658	1.574	3.539	3.117	0.000	0.000	0.000	0.306
Prev(%)	74.815	85.610	76.543	95.782	96.931	98.512	96.262	98.054	97.567	65.900	48.726	43.210	62.069	58.000	0.000	0.000	0.000	15.815

Dewhirst (35x9) (not published)

Notes:
Reads equally close to HMT 201 and 202 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.085	0.273	0.851	0.864	1.124	2.810	3.057	2.423	2.775	0.005
10^thp	0.000	0.000	0.003	0.004	0.052	0.033	0.107	0.097	0.019	0.000
90^thp	0.169	0.277	2.159	2.247	2.503	8.678	7.465	6.956	6.408	0.002
Stdev	0.257	0.945	1.933	0.922	1.059	4.133	4.100	3.138	3.451	0.016
Prev(%)	82.432	88.235	95.349	94.286	96.429	94.000	96.970	96.774	100.000	10.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

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