HOMD ::Species:Fusobacterium hwasookii

Species: Fusobacterium hwasookii (HMT-953)

Full Lineage: Bacteria; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium; Fusobacterium hwasookii Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-953: Body Sites Data | HMT-953: Taxon Description | Life Page: Fusobacterium hwasookii

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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HMP 16S RefSeq (V1-V3) (not published)

** View Notes (mouse over) **

Notes:
Reads equidistant to HMT-202 and HMT-953 were assigned to each taxon in proportion to the abundance of HMT-202 and HMT-953 individually at these sites (AKE,BMU,PTO,SAL,SUPP).

Reads equidistant to HMT-201 and HMT-953 were assigned to each taxon in proportion to the abundance of HMT-201 and HMT-953 individually at this body site (SUBP).

Some of the reads equidistant from these taxa (201-202-953) are included in HMT-953 because they are too close to differentiate at this site (SUPP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.289	0.375	0.030	0.036	0.000	0.043	0.015	0.191	0.000	0.000	0.004	0.003	0.004	0.005	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.821	1.096	0.060	0.101	0.000	0.143	0.028	0.301	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.723	0.859	0.087	0.103	0.000	0.095	0.072	0.840	0.000	0.000	0.042	0.037	0.045	0.045	0.000	0.000	0.000	0.000
Prev(%)	83.444	78.808	33.566	39.726	0.000	40.000	19.345	76.000	0.000	0.000	3.161	4.249	1.724	3.226	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

** View Notes (mouse over) **

Notes:
Reads equidistant to HMT-202 and HMT-953 were assigned to each taxon in proportion to the abundance of HMT-202 and HMT-953 individually at this body site (SUPP).

Some of the reads equidistant from these taxa (202-370-953) are included in HMT-953 because they are too close to differentiate at this site (SUPP).

Some of the reads equidistant from these taxa (202-203-370-953) are included in HMT-953 because they are too close to differentiate at this site (SUPP).

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.050	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.113	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.000	0.148	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	0.000	87.561	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

** View Notes (mouse over) **

Notes:
Reads equally close to HMT 202 and 953 were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.326	0.486	0.059	0.141	0.099	0.072	0.070	0.171	0.023	0.001
10^thp	0.000	0.013	0.000	0.000	0.004	0.002	0.002	0.001	0.000	0.000
90^thp	0.841	1.444	0.202	0.316	0.294	0.152	0.159	0.333	0.055	0.000
Stdev	0.656	0.736	0.117	0.326	0.168	0.135	0.158	0.428	0.053	0.002
Prev(%)	89.189	94.118	79.070	80.000	92.857	90.000	93.939	90.323	70.000	5.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.072	0.151	0.000	0.011	0.024	0.000	0.013	0.015	0.006	0.017	0.002	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.127	0.430	0.000	0.008	0.015	0.000	0.050	0.010	0.018	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.129	0.439	0.000	0.041	0.131	0.000	0.023	0.055	0.019	0.217	0.029	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	50.000	42.677	0.000	11.765	10.372	0.000	25.000	12.500	12.000	8.920	0.901	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.146	0.162	0.060	0.023	0.006	0.032	0.005	0.019	0.007	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.497	0.527	0.041	0.068	0.024	0.106	0.000	0.039	0.021	0.000
Stdev	0.265	0.377	0.402	0.050	0.014	0.072	0.022	0.074	0.022	0.000
Prev(%)	57.143	49.351	16.883	35.065	18.182	31.169	7.792	22.078	16.883	0.000

Eren V3-V5 www.pnas.org

** View Notes (mouse over) **

Notes:
Reads equally close to F. hwasookii and F. sp. HMT 370 were assigned half to each taxon.

Reads equally close to F. hwasookii, F. periodonticum, and F. sp. HMT 370 were assigned one-third to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.233	0.278	0.054	0.041	0.009	0.060	0.032	0.079	0.016	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.727	0.897	0.047	0.090	0.026	0.164	0.074	0.142	0.028	0.000
Stdev	0.425	0.553	0.322	0.118	0.022	0.111	0.102	0.283	0.057	0.000
Prev(%)	62.162	63.514	33.784	50.000	26.351	56.081	46.622	50.676	37.838	0.000

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