HOMD ::Species:Campylobacter curvus

Taxonomy: V4.2 | 16S rRNA RefSeq: V16.03 | Genomic RefSeq: V11.02 | Viruses: V1.2

Species: Campylobacter curvus (HMT-580)

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Full Lineage: Bacteria; Pseudomonadota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter curvus Each rank name is a link to abundance plots at that rank:

LINKS: Ecology Home | HMT-580: Body Sites Data | HMT-580: Taxon Description | Life Page: Campylobacter curvus

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

Eren V3-V5 www.pnas.org (data from healthy subjects)

Notes:
Reads equally close to C. curvus and C. concisus were assigned half to each taxon.

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.091	0.116	0.191	0.083	0.159	1.019	0.406	0.359	0.362	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.273	0.340	0.453	0.199	0.424	2.851	1.150	0.995	0.798	0.000
Stdev	0.158	0.207	0.596	0.151	0.206	1.266	0.523	0.515	0.521	0.001
Prev(%)	66.216	68.243	44.595	62.838	76.351	83.784	81.081	79.054	77.027	1.399

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.007	0.021	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.034	0.154	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	8.609	7.947	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.003	0.003	0.002	0.001	0.001	0.000	0.000	0.001	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.002	0.003	0.001	0.002	0.001	0.001	0.001	0.003	0.000	0.000
Stdev	0.016	0.012	0.011	0.002	0.002	0.001	0.001	0.002	0.001	0.000
Prev(%)	12.162	23.529	11.628	17.143	17.857	14.000	12.121	16.129	7.500	0.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.020	0.018	0.030	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.007	0.040	0.077	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.092	0.066	0.080	0.000	0.000	0.000	0.000	0.000	0.000	0.004	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	12.500	20.202	16.667	0.000	0.000	0.000	0.000	0.000	0.000	0.235	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000