Species: Aggregatibacter sp. HMT-513 (HMT-513)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
HMP 16S RefSeq (V3-V5) (not published)
** View Notes (mouse over) **
Notes:
Neither HMT-513 nor HMT-762 were present singularly so these reads were split evenly at this site (BMU).
Neither HMT-513 nor HMT-762 were present singularly so these reads were split evenly at this site (SAL).
Neither HMT-513 nor HMT-762 were present singularly so these reads were split evenly at this site (BMU).
Neither HMT-513 nor HMT-762 were present singularly so these reads were split evenly at this site (SAL).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.000 | 0.000 | 0.000 | 0.029 | 0.000 | 0.059 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.000 | 0.000 | 0.000 | 0.051 | 0.000 | 0.154 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.000 | 0.000 | 0.000 | 0.176 | 0.000 | 0.173 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 0.000 | 0.000 | 0.000 | 23.821 | 0.000 | 37.798 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Dewhirst (35x9) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.045 | 0.039 | 0.020 | 0.040 | 0.042 | 0.010 | 0.013 | 0.032 | 0.001 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.099 | 0.148 | 0.035 | 0.073 | 0.064 | 0.018 | 0.008 | 0.010 | 0.004 | 0.000 |
| Stdev | 0.141 | 0.075 | 0.047 | 0.109 | 0.151 | 0.028 | 0.059 | 0.157 | 0.002 | 0.000 |
| Prev(%) | 41.892 | 55.882 | 58.140 | 71.429 | 50.000 | 60.000 | 33.333 | 29.032 | 27.500 | 0.000 |
HMP Metaphlan (not published)
No Notes
Eren V1-V3 www.pnas.org
No Notes
Eren V3-V5 www.pnas.org
** View Notes (mouse over) **
Notes:
Reads equally close to A. segnis, A. sp. HMT 512, and A. sp. HMT 513 were assigned one-third to each taxon.
Reads equally close to A. segnis, A. sp. HMT 512, and A. sp. HMT 513 were assigned one-third to each taxon.
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.134 | 0.150 | 0.004 | 0.018 | 0.014 | 0.056 | 0.014 | 0.040 | 0.008 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.343 | 0.332 | 0.005 | 0.038 | 0.028 | 0.203 | 0.028 | 0.038 | 0.012 | 0.000 |
| Stdev | 0.368 | 0.413 | 0.021 | 0.083 | 0.047 | 0.117 | 0.051 | 0.269 | 0.047 | 0.000 |
| Prev(%) | 42.568 | 50.000 | 10.811 | 31.081 | 31.081 | 49.324 | 29.054 | 30.405 | 20.946 | 0.000 |
