Species: Aggregatibacter aphrophilus (HMT-545)
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Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
** View Notes (mouse over) **
Notes:
Neither HMT-545 nor HMT-720 were present singularly so these reads were split evenly at this site (PTO).
Because HMT-720 is not present individually, all equidistant reads were assigned to HMT-545 at this body site (SUPP).
Neither HMT-545 nor HMT-720 were present singularly so these reads were split evenly at this site (PTO).
Because HMT-720 is not present individually, all equidistant reads were assigned to HMT-545 at this body site (SUPP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.128 | 0.162 | 0.016 | 0.010 | 0.004 | 0.012 | 0.009 | 0.050 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.243 | 0.196 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.427 | 0.625 | 0.171 | 0.078 | 0.026 | 0.081 | 0.108 | 0.500 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 45.033 | 44.371 | 3.497 | 6.849 | 4.698 | 5.385 | 8.333 | 10.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
HMP 16S RefSeq (V3-V5) (not published)
** View Notes (mouse over) **
Notes:
Because HMT-720 is not present individually, all equidistant reads were assigned to HMT-545 at these sites (PTO,SAL,SUBP,SUPP).
Because HMT-720 is not present individually, all equidistant reads were assigned to HMT-545 at these sites (PTO,SAL,SUBP,SUPP).
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 1.033 | 1.276 | 0.180 | 0.116 | 0.032 | 0.270 | 0.000 | 0.361 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 2.894 | 3.584 | 0.368 | 0.246 | 0.067 | 0.606 | 0.000 | 0.208 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 2.201 | 3.219 | 0.774 | 0.415 | 0.143 | 0.781 | 0.000 | 2.960 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 71.605 | 71.463 | 43.704 | 37.717 | 23.274 | 60.417 | 0.000 | 41.119 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Dewhirst (35x9) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.245 | 0.072 | 0.065 | 0.336 | 0.032 | 0.030 | 0.012 | 0.031 | 0.008 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.784 | 0.183 | 0.036 | 0.123 | 0.075 | 0.054 | 0.014 | 0.047 | 0.021 | 0.000 |
| Stdev | 0.764 | 0.154 | 0.342 | 1.780 | 0.069 | 0.103 | 0.048 | 0.103 | 0.022 | 0.000 |
| Prev(%) | 59.459 | 64.706 | 44.186 | 74.286 | 64.286 | 58.000 | 39.394 | 45.161 | 42.500 | 0.000 |
HMP Metaphlan (not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.348 | 0.406 | 0.002 | 0.002 | 0.030 | 0.000 | 0.221 | 0.051 | 0.007 | 0.001 | 0.001 | 0.009 | 0.036 | 0.000 | 0.000 | 0.000 | 0.000 | 0.002 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.823 | 0.645 | 0.000 | 0.010 | 0.030 | 0.000 | 0.457 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 0.533 | 1.348 | 0.008 | 0.006 | 0.157 | 0.000 | 0.252 | 0.205 | 0.026 | 0.008 | 0.013 | 0.039 | 0.176 | 0.000 | 0.000 | 0.000 | 0.000 | 0.038 |
| Prev(%) | 66.667 | 47.980 | 4.167 | 17.647 | 15.160 | 0.000 | 75.000 | 6.250 | 8.000 | 3.756 | 0.901 | 8.333 | 6.250 | 0.000 | 0.000 | 0.000 | 0.000 | 0.182 |
Eren V1-V3 www.pnas.org
No Notes
Eren V3-V5 www.pnas.org
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 0.194 | 0.077 | 0.001 | 0.003 | 0.002 | 0.021 | 0.020 | 0.067 | 0.001 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 0.565 | 0.206 | 0.000 | 0.000 | 0.000 | 0.043 | 0.000 | 0.014 | 0.000 | 0.000 |
| Stdev | 0.553 | 0.252 | 0.005 | 0.012 | 0.010 | 0.069 | 0.167 | 0.506 | 0.004 | 0.000 |
| Prev(%) | 27.027 | 21.622 | 2.027 | 7.432 | 6.757 | 18.919 | 5.405 | 12.838 | 2.703 | 0.000 |
