Phylum: Spirochaetota
Download OptionsLower rank member(s): [Class:Spirochaetia]
Genera:
LINKS: Ecology Home
| Life Page: Spirochaetota
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 1.091 | 0.191 | 0.000 | 0.000 | 0.018 | 0.000 | 0.110 | 0.597 | 0.034 | 0.000 | 0.000 | 0.000 | 0.000 | 0.010 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 3.237 | 0.559 | 0.000 | 0.000 | 0.069 | 0.000 | 0.271 | 1.409 | 0.131 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 1.876 | 0.472 | 0.000 | 0.000 | 0.044 | 0.000 | 0.314 | 1.615 | 0.077 | 0.000 | 0.000 | 0.000 | 0.000 | 0.114 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 76.821 | 54.967 | 0.000 | 0.000 | 26.846 | 0.000 | 47.024 | 84.000 | 39.355 | 0.000 | 0.000 | 0.000 | 0.000 | 1.382 | 0.000 | 0.000 | 0.000 | 0.000 |
HMP 16S RefSeq (V3-V5) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 2.151 | 0.374 | 0.000 | 0.000 | 0.000 | 0.277 | 0.233 | 1.010 | 0.052 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 5.752 | 1.132 | 0.000 | 0.000 | 0.000 | 0.690 | 0.499 | 2.285 | 0.136 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 3.413 | 0.961 | 0.000 | 0.000 | 0.000 | 0.625 | 0.731 | 2.455 | 0.163 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Prev(%) | 80.988 | 59.268 | 0.000 | 0.000 | 0.000 | 72.321 | 50.467 | 81.995 | 36.496 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
Dewhirst (35x9) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 1.366 | 0.235 | 0.026 | 0.097 | 0.028 | 0.018 | 0.057 | 0.328 | 0.010 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 3.992 | 0.488 | 0.065 | 0.275 | 0.075 | 0.051 | 0.095 | 0.425 | 0.021 | 0.000 |
| Stdev | 3.435 | 0.499 | 0.053 | 0.269 | 0.070 | 0.021 | 0.126 | 0.874 | 0.025 | 0.000 |
| Prev(%) | 79.730 | 76.471 | 55.814 | 62.857 | 60.714 | 70.000 | 87.879 | 77.419 | 47.500 | 0.000 |
HMP Metaphlan (not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 2.525 | 0.424 | 4.357 | 0.000 | 0.023 | 0.030 | 0.117 | 0.824 | 0.714 | 0.095 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 10thp | 0.046 | 0.000 | 0.359 | 0.000 | 0.000 | 0.030 | 0.000 | 0.000 | 0.008 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 7.186 | 1.285 | 8.423 | 0.000 | 0.015 | 0.030 | 0.302 | 0.850 | 2.164 | 0.275 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| Stdev | 3.940 | 1.077 | 4.941 | 0.000 | 0.126 | 0.000 | 0.135 | 2.777 | 0.975 | 0.247 | 0.001 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.001 |
| Prev(%) | 91.667 | 57.323 | 100.000 | 0.000 | 10.904 | 100.000 | 62.500 | 37.500 | 88.000 | 41.784 | 0.450 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.182 |
Eren V1-V3 www.pnas.org
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 1.906 | 0.557 | 0.001 | 0.055 | 0.039 | 0.243 | 0.181 | 0.708 | 0.051 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 6.051 | 1.797 | 0.000 | 0.127 | 0.130 | 0.443 | 0.409 | 1.196 | 0.170 | 0.000 |
| Stdev | 3.639 | 1.415 | 0.005 | 0.142 | 0.080 | 0.754 | 0.504 | 2.095 | 0.108 | 0.003 |
| Prev(%) | 72.727 | 49.351 | 6.494 | 37.662 | 38.961 | 64.935 | 50.649 | 80.519 | 40.260 | 2.597 |
Eren V3-V5 www.pnas.org
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 3.632 | 1.061 | 0.016 | 0.145 | 0.057 | 0.497 | 0.230 | 0.689 | 0.050 | 0.000 |
| 10thp | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 10.365 | 2.388 | 0.016 | 0.431 | 0.141 | 1.181 | 0.450 | 1.766 | 0.183 | 0.000 |
| Stdev | 6.341 | 2.611 | 0.104 | 0.456 | 0.143 | 1.019 | 0.804 | 1.867 | 0.125 | 0.000 |
| Prev(%) | 85.135 | 72.973 | 12.162 | 55.405 | 41.892 | 79.730 | 64.189 | 72.297 | 40.541 | 0.000 |
