Phylum: Pseudomonadota
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LINKS: Ecology Home
| Life Page: Pseudomonadota
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 15.063 | 17.617 | 12.371 | 9.769 | 9.168 | 15.379 | 12.657 | 11.750 | 14.182 | 6.881 | 2.256 | 2.839 | 6.554 | 5.669 | 1.184 | 0.466 | 0.098 | 0.000 |
| 10thp | 4.914 | 6.973 | 2.260 | 1.906 | 2.574 | 6.036 | 2.748 | 3.137 | 3.232 | 0.130 | 0.016 | 0.018 | 0.610 | 0.488 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 27.259 | 34.848 | 24.873 | 18.260 | 16.644 | 27.008 | 27.559 | 24.848 | 29.950 | 23.085 | 3.221 | 4.504 | 14.918 | 12.963 | 2.466 | 1.319 | 0.264 | 0.000 |
| Stdev | 8.784 | 10.787 | 9.185 | 7.174 | 7.015 | 8.729 | 12.753 | 9.378 | 10.081 | 10.622 | 9.059 | 10.223 | 8.784 | 8.495 | 3.655 | 0.965 | 0.245 | 0.000 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 99.333 | 92.529 | 94.618 | 99.425 | 98.618 | 74.648 | 66.216 | 44.737 | 0.000 |
HMP 16S RefSeq (V3-V5) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 15.782 | 21.953 | 37.022 | 34.769 | 28.360 | 25.075 | 22.217 | 19.757 | 25.935 | 8.936 | 5.176 | 6.458 | 12.343 | 13.255 | 0.589 | 0.671 | 0.020 | 0.153 |
| 10thp | 5.352 | 8.689 | 6.881 | 13.030 | 10.772 | 10.814 | 5.223 | 4.148 | 5.766 | 0.205 | 0.042 | 0.048 | 1.139 | 0.908 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 29.894 | 39.914 | 74.059 | 60.926 | 46.628 | 41.255 | 45.858 | 40.525 | 49.587 | 23.956 | 12.651 | 19.621 | 31.371 | 35.452 | 1.666 | 0.609 | 0.017 | 0.218 |
| Stdev | 10.024 | 12.145 | 24.509 | 18.006 | 14.334 | 12.293 | 18.368 | 14.490 | 16.549 | 14.864 | 12.655 | 14.890 | 16.070 | 16.940 | 2.093 | 4.077 | 0.141 | 0.745 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 97.318 | 96.178 | 96.605 | 100.000 | 98.667 | 62.069 | 47.541 | 16.754 | 48.662 |
Dewhirst (35x9) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 8.472 | 8.234 | 17.658 | 14.126 | 15.247 | 10.876 | 9.011 | 8.486 | 13.131 | 1.100 |
| 10thp | 0.900 | 1.299 | 1.883 | 1.983 | 2.877 | 1.168 | 1.056 | 1.301 | 1.700 | 0.000 |
| 90thp | 17.872 | 14.599 | 38.283 | 32.204 | 28.612 | 26.635 | 24.860 | 21.149 | 30.286 | 3.157 |
| Stdev | 8.496 | 8.060 | 16.393 | 11.931 | 11.787 | 10.454 | 9.122 | 8.170 | 12.391 | 1.690 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 70.000 |
HMP Metaphlan (not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 13.308 | 18.751 | 6.663 | 23.544 | 25.884 | 18.020 | 18.730 | 26.475 | 14.712 | 16.394 | 8.034 | 0.185 | 1.002 | 18.930 | 0.496 | 1.697 | 0.589 | 0.480 |
| 10thp | 5.560 | 6.170 | 0.608 | 6.914 | 7.120 | 18.020 | 9.176 | 5.175 | 2.146 | 3.370 | 0.000 | 0.000 | 0.000 | 18.930 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 20.299 | 35.320 | 14.372 | 43.460 | 47.525 | 18.020 | 25.810 | 52.120 | 30.482 | 34.410 | 23.727 | 0.687 | 3.214 | 18.930 | 1.010 | 5.250 | 0.907 | 0.541 |
| Stdev | 8.708 | 11.012 | 9.251 | 13.681 | 15.557 | 0.000 | 7.665 | 20.211 | 15.287 | 12.530 | 19.177 | 0.348 | 2.735 | 0.000 | 0.891 | 3.234 | 2.353 | 4.241 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 99.734 | 100.000 | 100.000 | 100.000 | 100.000 | 99.765 | 57.658 | 62.500 | 56.250 | 100.000 | 63.636 | 78.571 | 42.424 | 71.818 |
Eren V1-V3 www.pnas.org
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 15.108 | 17.628 | 10.625 | 8.131 | 8.255 | 16.356 | 12.956 | 12.073 | 15.668 | 0.018 |
| 10thp | 4.970 | 6.717 | 2.143 | 2.020 | 2.304 | 7.255 | 2.589 | 2.764 | 4.004 | 0.000 |
| 90thp | 28.650 | 32.446 | 23.697 | 15.446 | 16.569 | 26.746 | 24.334 | 24.562 | 34.802 | 0.064 |
| Stdev | 10.057 | 10.417 | 9.289 | 7.061 | 5.721 | 8.322 | 11.979 | 9.156 | 11.463 | 0.042 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 27.273 |
Eren V3-V5 www.pnas.org
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 14.044 | 20.208 | 25.078 | 17.814 | 16.828 | 21.012 | 13.747 | 15.156 | 20.821 | 0.057 |
| 10thp | 3.786 | 8.194 | 10.899 | 6.409 | 4.922 | 9.411 | 2.740 | 2.986 | 4.016 | 0.000 |
| 90thp | 27.533 | 36.052 | 41.483 | 29.982 | 31.140 | 34.541 | 28.719 | 31.939 | 41.343 | 0.154 |
| Stdev | 9.521 | 11.171 | 12.074 | 9.737 | 9.912 | 9.745 | 11.567 | 10.586 | 14.639 | 0.201 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 34.266 |
