HOMD ::phylum::Bacteroidota

Phylum: Bacteroidota

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacteroidota
Lower rank member(s): [Class:Bacteroidia] [Class:Chitinophagia] [Class:Flavobacteriia] [Class:Sphingobacteriia]
Genera:

LINKS: Ecology Home | Life Page: Bacteroidota

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	19.144	15.414	11.366	6.344	11.771	18.997	19.168	19.767	14.470	0.501	0.378	0.189	0.877	1.093	0.846	0.779	0.591	0.022
10^thp	6.181	4.735	1.047	0.884	3.693	9.512	8.024	8.697	6.301	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	29.832	26.818	28.590	13.052	19.472	31.548	29.882	30.991	22.692	1.216	0.590	0.324	2.074	3.058	1.142	0.699	0.163	0.000
Stdev	9.372	9.054	10.948	5.308	6.194	8.285	8.454	8.455	6.205	1.224	1.534	1.035	1.836	2.385	3.173	3.850	3.459	0.271
Prev(%)	100.000	100.000	100.000	99.315	100.000	99.231	99.702	100.000	100.000	78.667	66.092	56.091	72.414	71.889	59.155	44.595	34.211	0.654

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	21.413	16.328	20.810	12.121	13.153	21.447	16.477	21.092	12.148	0.260	1.072	0.706	2.393	1.664	1.045	0.380	0.586	0.000
10^thp	7.896	5.024	1.594	2.310	4.417	10.676	6.158	8.785	3.817	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	33.448	27.023	48.945	24.941	23.604	34.108	29.023	34.352	22.827	0.452	1.517	0.855	4.298	4.264	1.630	0.316	0.182	0.000
Stdev	9.864	8.135	18.230	9.741	7.724	9.075	9.106	10.294	7.792	0.903	3.780	2.658	6.716	3.995	3.458	2.300	3.921	0.000
Prev(%)	100.000	100.000	100.000	100.000	99.744	100.000	100.000	100.000	100.000	54.023	57.643	52.160	73.793	70.667	64.368	35.519	25.654	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	16.774	14.197	5.963	6.275	13.655	19.559	20.712	21.526	16.637	0.057
10^thp	2.365	3.904	0.155	0.177	2.041	2.579	9.346	7.931	0.474	0.000
90^thp	30.041	26.665	14.305	17.624	27.003	43.986	30.931	38.269	30.836	0.172
Stdev	10.439	9.048	7.242	6.493	11.194	16.097	9.136	12.042	11.017	0.109
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	40.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	16.365	12.693	20.415	5.158	5.561	12.010	24.445	23.303	29.023	16.162	2.794	0.093	0.124	5.830	1.064	1.720	2.744	62.408
10^thp	6.855	2.915	6.694	0.262	0.510	12.010	15.161	9.650	16.770	7.420	0.000	0.000	0.000	5.830	0.000	0.000	0.000	29.833
90^thp	24.664	24.405	33.095	7.002	14.080	12.010	35.864	33.785	46.738	25.450	6.061	0.380	0.377	5.830	2.110	8.257	6.679	88.780
Stdev	6.967	7.821	10.053	9.420	5.685	0.000	9.366	11.048	12.454	7.213	9.669	0.179	0.277	0.000	2.698	4.282	9.457	21.974
Prev(%)	100.000	99.747	100.000	94.118	99.202	100.000	100.000	100.000	100.000	100.000	45.495	50.000	46.875	100.000	63.636	35.714	46.465	100.000

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	19.213	15.677	10.071	7.367	10.718	17.622	15.084	16.657	14.301	0.012
10^thp	3.988	3.700	0.741	1.337	3.961	9.783	7.012	7.034	5.683	0.000
90^thp	31.283	26.853	25.206	16.836	18.504	25.481	23.535	27.684	25.046	0.047
Stdev	10.393	8.755	11.033	5.566	5.994	6.590	7.103	8.351	7.550	0.023
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	31.169

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	25.119	18.673	13.535	9.247	14.494	26.431	21.727	22.016	18.745	0.005
10^thp	10.244	6.325	0.370	1.879	5.195	14.772	9.440	8.957	7.910	0.000
90^thp	37.407	28.956	33.506	19.939	25.738	37.783	35.519	36.646	29.301	0.016
Stdev	10.872	8.354	13.634	7.545	8.023	9.318	10.329	11.092	8.453	0.014
Prev(%)	100.000	100.000	99.324	100.000	100.000	100.000	100.000	100.000	100.000	15.385

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