Phylum: Actinomycetota
Download OptionsLower rank member(s): [Class:Actinomycetes] [Class:Coriobacteriia]
Genera:
LINKS: Ecology Home
| Life Page: Actinomycetota
Hide Legend
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
Body Site Legend:
| SUBP-- Subgingival Plaque |
| SUPP -- Supragingival Plaque |
| PERIO -- Periodontal |
| AKE -- Attached Keratinized Gingiva |
| BMU -- Buccal Mucosa |
| HPA -- Hard Palate |
| SAL -- Saliva |
| THR -- Throat |
| PTO -- Palatine Tonsils |
| TDO -- Tongue Dorsum |
| ANA -- Anterior Nares |
| LRC -- L_Retroauricular Crease |
| RRC -- R_Retroauricular Crease |
| LAF -- L_Antecubital Fossa |
| RAF -- R_Antecubital Fossa |
| VIN -- Vaginal Introitus |
| MVA -- Mid Vagina |
| PFO -- Posterior Fornix |
| STO -- Stool |
Prev - Prevalence
10thp - 10th percentile
90thp - 90th percentile
ND - less than 0.001%
HMP 16S RefSeq (V1-V3) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 23.347 | 28.551 | 2.844 | 9.078 | 9.798 | 6.134 | 9.502 | 7.778 | 14.764 | 62.297 | 69.905 | 69.770 | 50.820 | 54.300 | 1.216 | 1.202 | 1.157 | 0.637 |
| 10thp | 6.586 | 12.679 | 0.118 | 1.163 | 2.715 | 1.305 | 2.538 | 1.508 | 5.394 | 30.553 | 33.585 | 33.274 | 10.314 | 10.258 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 41.780 | 46.821 | 6.580 | 25.033 | 16.808 | 12.640 | 18.085 | 16.698 | 25.103 | 86.726 | 95.998 | 96.137 | 87.514 | 90.079 | 2.478 | 2.267 | 0.819 | 1.816 |
| Stdev | 13.863 | 14.791 | 4.687 | 8.701 | 6.792 | 5.750 | 6.671 | 5.842 | 8.110 | 21.694 | 24.565 | 25.093 | 28.092 | 28.499 | 3.816 | 3.892 | 5.674 | 1.324 |
| Prev(%) | 98.675 | 97.351 | 97.203 | 97.260 | 97.987 | 97.692 | 99.702 | 96.000 | 99.355 | 99.000 | 100.000 | 100.000 | 99.425 | 100.000 | 78.873 | 78.378 | 22.368 | 68.627 |
HMP 16S RefSeq (V3-V5) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | LAF | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 24.529 | 30.957 | 5.408 | 10.866 | 13.719 | 6.747 | 12.423 | 8.073 | 15.319 | 74.193 | 79.409 | 78.425 | 54.146 | 57.719 | 6.102 | 6.015 | 6.001 | 2.324 |
| 10thp | 7.233 | 12.756 | 0.045 | 1.834 | 3.994 | 1.752 | 2.480 | 1.463 | 4.179 | 43.632 | 29.455 | 28.546 | 6.830 | 7.357 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 46.371 | 53.396 | 12.033 | 22.021 | 24.919 | 12.230 | 24.905 | 17.832 | 27.726 | 94.990 | 99.257 | 99.377 | 93.084 | 93.554 | 22.339 | 20.282 | 18.388 | 5.004 |
| Stdev | 16.320 | 16.219 | 12.024 | 12.520 | 11.557 | 9.269 | 11.031 | 7.944 | 12.074 | 20.653 | 26.737 | 27.574 | 31.390 | 31.950 | 14.318 | 15.653 | 16.482 | 8.599 |
| Prev(%) | 100.000 | 100.000 | 93.333 | 100.000 | 99.744 | 99.702 | 100.000 | 99.027 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 86.782 | 83.607 | 67.016 | 83.942 |
Dewhirst (35x9) (not published)
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 16.739 | 14.160 | 4.121 | 6.023 | 6.583 | 7.266 | 4.780 | 5.098 | 6.338 | 78.476 |
| 10thp | 2.313 | 4.343 | 0.111 | 0.968 | 1.736 | 1.592 | 1.543 | 0.939 | 0.162 | 52.670 |
| 90thp | 37.576 | 34.678 | 12.252 | 14.680 | 11.606 | 14.668 | 9.263 | 10.559 | 11.981 | 97.202 |
| Stdev | 14.744 | 13.620 | 6.198 | 5.786 | 5.406 | 5.295 | 2.871 | 5.127 | 5.018 | 24.771 |
| Prev(%) | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 |
HMP Metaphlan (not published)
No Notes
| SUBP | SUPP | PERIO | AKE | BMU | HPA | SAL | THR | PTO | TDO | ANA | LRC | RRC | RAF | VIN | MVA | PFO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 24.491 | 31.068 | 23.676 | 3.894 | 9.336 | 10.200 | 5.053 | 5.160 | 7.755 | 18.249 | 49.504 | 70.605 | 74.775 | 42.000 | 10.551 | 9.599 | 10.972 | 0.433 |
| 10thp | 7.696 | 12.585 | 10.450 | 0.000 | 0.940 | 10.200 | 1.397 | 0.575 | 2.520 | 5.650 | 12.588 | 19.124 | 48.609 | 42.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| 90thp | 46.250 | 50.315 | 52.717 | 6.886 | 22.410 | 10.200 | 12.406 | 9.165 | 17.534 | 32.255 | 79.469 | 93.708 | 95.409 | 42.000 | 16.040 | 25.418 | 48.633 | 0.871 |
| Stdev | 14.743 | 14.991 | 18.002 | 6.941 | 9.372 | 0.000 | 6.258 | 3.416 | 8.411 | 10.868 | 24.311 | 28.709 | 27.244 | 0.000 | 22.553 | 26.125 | 24.053 | 1.361 |
| Prev(%) | 100.000 | 99.747 | 100.000 | 82.353 | 99.734 | 100.000 | 100.000 | 100.000 | 100.000 | 100.000 | 98.198 | 100.000 | 100.000 | 100.000 | 63.636 | 64.286 | 48.990 | 80.182 |
Eren V1-V3 www.pnas.org
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 25.099 | 30.996 | 1.966 | 7.013 | 8.905 | 6.490 | 11.119 | 8.175 | 16.133 | 0.012 |
| 10thp | 7.793 | 12.330 | 0.036 | 0.629 | 2.519 | 1.734 | 1.921 | 1.865 | 6.490 | 0.000 |
| 90thp | 44.096 | 50.371 | 4.946 | 14.256 | 15.916 | 13.136 | 20.686 | 16.384 | 25.864 | 0.050 |
| Stdev | 15.880 | 15.759 | 3.972 | 7.285 | 6.246 | 6.006 | 8.422 | 6.140 | 8.786 | 0.026 |
| Prev(%) | 100.000 | 100.000 | 92.208 | 100.000 | 98.701 | 97.403 | 100.000 | 98.701 | 100.000 | 25.974 |
Eren V3-V5 www.pnas.org
No Notes
| SUBP | SUPP | AKE | BMU | HPA | SAL | THR | PTO | TDO | STO | |
|---|---|---|---|---|---|---|---|---|---|---|
| Avg (%) | 15.451 | 21.964 | 0.873 | 3.015 | 4.805 | 3.275 | 4.939 | 4.085 | 7.225 | 0.007 |
| 10thp | 3.843 | 8.117 | 0.000 | 0.294 | 1.316 | 0.914 | 1.226 | 0.643 | 1.408 | 0.000 |
| 90thp | 29.518 | 36.925 | 2.406 | 7.531 | 9.481 | 6.442 | 8.853 | 8.189 | 14.958 | 0.019 |
| Stdev | 11.116 | 11.808 | 3.221 | 3.906 | 3.997 | 2.654 | 3.827 | 4.031 | 5.762 | 0.027 |
| Prev(%) | 100.000 | 100.000 | 77.027 | 99.324 | 100.000 | 100.000 | 99.324 | 100.000 | 100.000 | 16.783 |
