HOMD ::phylum::Actinomycetota

Phylum: Actinomycetota

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Actinomycetota
Lower rank member(s): [Class:Actinomycetes] [Class:Coriobacteriia]
Genera:

LINKS: Ecology Home | Life Page: Actinomycetota

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	23.347	28.551	2.844	9.078	9.798	6.134	9.502	7.778	14.764	62.297	69.905	69.770	50.820	54.300	1.216	1.202	1.157	0.637
10^thp	6.586	12.679	0.118	1.163	2.715	1.305	2.538	1.508	5.394	30.553	33.585	33.274	10.314	10.258	0.000	0.000	0.000	0.000
90^thp	41.780	46.821	6.580	25.033	16.808	12.640	18.085	16.698	25.103	86.726	95.998	96.137	87.514	90.079	2.478	2.267	0.819	1.816
Stdev	13.863	14.791	4.687	8.701	6.792	5.750	6.671	5.842	8.110	21.694	24.565	25.093	28.092	28.499	3.816	3.892	5.674	1.324
Prev(%)	98.675	97.351	97.203	97.260	97.987	97.692	99.702	96.000	99.355	99.000	100.000	100.000	99.425	100.000	78.873	78.378	22.368	68.627

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	24.529	30.957	5.408	10.866	13.719	6.747	12.423	8.073	15.319	74.193	79.409	78.425	54.146	57.719	6.102	6.015	6.001	2.324
10^thp	7.233	12.756	0.045	1.834	3.994	1.752	2.480	1.463	4.179	43.632	29.455	28.546	6.830	7.357	0.000	0.000	0.000	0.000
90^thp	46.371	53.396	12.033	22.021	24.919	12.230	24.905	17.832	27.726	94.990	99.257	99.377	93.084	93.554	22.339	20.282	18.388	5.004
Stdev	16.320	16.219	12.024	12.520	11.557	9.269	11.031	7.944	12.074	20.653	26.737	27.574	31.390	31.950	14.318	15.653	16.482	8.599
Prev(%)	100.000	100.000	93.333	100.000	99.744	99.702	100.000	99.027	100.000	100.000	100.000	100.000	100.000	100.000	86.782	83.607	67.016	83.942

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	16.739	14.160	4.121	6.023	6.583	7.266	4.780	5.098	6.338	78.476
10^thp	2.313	4.343	0.111	0.968	1.736	1.592	1.543	0.939	0.162	52.670
90^thp	37.576	34.678	12.252	14.680	11.606	14.668	9.263	10.559	11.981	97.202
Stdev	14.744	13.620	6.198	5.786	5.406	5.295	2.871	5.127	5.018	24.771
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	24.491	31.068	23.676	3.894	9.336	10.200	5.053	5.160	7.755	18.249	49.504	70.605	74.775	42.000	10.551	9.599	10.972	0.433
10^thp	7.696	12.585	10.450	0.000	0.940	10.200	1.397	0.575	2.520	5.650	12.588	19.124	48.609	42.000	0.000	0.000	0.000	0.000
90^thp	46.250	50.315	52.717	6.886	22.410	10.200	12.406	9.165	17.534	32.255	79.469	93.708	95.409	42.000	16.040	25.418	48.633	0.871
Stdev	14.743	14.991	18.002	6.941	9.372	0.000	6.258	3.416	8.411	10.868	24.311	28.709	27.244	0.000	22.553	26.125	24.053	1.361
Prev(%)	100.000	99.747	100.000	82.353	99.734	100.000	100.000	100.000	100.000	100.000	98.198	100.000	100.000	100.000	63.636	64.286	48.990	80.182

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	25.099	30.996	1.966	7.013	8.905	6.490	11.119	8.175	16.133	0.012
10^thp	7.793	12.330	0.036	0.629	2.519	1.734	1.921	1.865	6.490	0.000
90^thp	44.096	50.371	4.946	14.256	15.916	13.136	20.686	16.384	25.864	0.050
Stdev	15.880	15.759	3.972	7.285	6.246	6.006	8.422	6.140	8.786	0.026
Prev(%)	100.000	100.000	92.208	100.000	98.701	97.403	100.000	98.701	100.000	25.974

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	15.451	21.964	0.873	3.015	4.805	3.275	4.939	4.085	7.225	0.007
10^thp	3.843	8.117	0.000	0.294	1.316	0.914	1.226	0.643	1.408	0.000
90^thp	29.518	36.925	2.406	7.531	9.481	6.442	8.853	8.189	14.958	0.019
Stdev	11.116	11.808	3.221	3.906	3.997	2.654	3.827	4.031	5.762	0.027
Prev(%)	100.000	100.000	77.027	99.324	100.000	100.000	99.324	100.000	100.000	16.783

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