HOMD ::order::Mycobacteriales

Order: Mycobacteriales

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales
Lower rank member(s): [Family:Corynebacteriaceae] [Family:Dietziaceae] [Family:Lawsonellaceae] [Family:Mycobacteriaceae]
Genera:

LINKS: Ecology Home | Life Page: Mycobacteriales

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	5.894	8.518	0.415	0.230	0.151	0.095	0.134	0.043	0.000	38.295	7.715	6.496	7.135	8.707	0.121	0.065	0.000	0.000
10^thp	0.290	0.638	0.000	0.000	0.000	0.000	0.000	0.000	0.000	8.979	0.220	0.126	0.231	0.400	0.000	0.000	0.000	0.000
90^thp	13.643	16.837	0.602	0.474	0.247	0.194	0.169	0.032	0.000	69.009	24.069	16.430	14.611	20.459	0.301	0.076	0.000	0.000
Stdev	5.593	6.528	1.946	0.435	0.546	0.216	0.846	0.411	0.000	22.429	12.871	12.336	8.901	10.196	0.247	0.294	0.000	0.000
Prev(%)	94.702	96.026	42.657	84.247	75.168	60.000	47.917	34.667	0.000	99.000	96.839	96.601	93.103	96.774	67.606	37.838	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	9.590	13.188	0.840	0.742	0.596	0.295	0.715	0.198	0.113	44.161	10.080	10.354	9.201	9.643	0.728	0.233	0.073	0.251
10^thp	0.672	2.313	0.000	0.000	0.000	0.000	0.000	0.000	0.000	8.756	0.126	0.141	0.059	0.288	0.000	0.000	0.000	0.000
90^thp	19.583	24.763	1.404	1.798	1.111	0.644	0.656	0.082	0.019	78.185	33.691	33.607	25.142	21.582	0.763	0.531	0.084	0.000
Stdev	8.116	8.715	3.846	2.054	3.164	0.766	4.013	3.259	0.700	24.850	19.051	19.454	11.581	12.345	3.136	0.712	0.518	4.335
Prev(%)	98.765	98.780	57.037	86.104	76.726	83.333	62.305	38.686	11.679	100.000	98.408	96.914	92.414	96.000	68.391	58.470	34.031	3.893

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	3.308	1.623	0.121	0.213	0.561	0.036	0.076	0.633	0.009	59.419
10^thp	0.034	0.068	0.000	0.009	0.033	0.003	0.000	0.000	0.000	10.885
90^thp	9.524	3.705	0.166	0.547	1.096	0.083	0.069	0.034	0.010	94.208
Stdev	6.091	1.818	0.334	0.297	1.136	0.047	0.283	3.430	0.034	30.259
Prev(%)	98.649	100.000	76.744	100.000	96.429	94.000	81.818	70.968	45.000	100.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	7.915	11.333	6.605	0.764	0.464	0.000	0.182	0.051	0.039	0.110	23.353	3.000	1.613	2.040	0.066	1.536	0.118	0.120
10^thp	1.176	2.155	0.326	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.635	0.000	0.000	2.040	0.000	0.000	0.000	0.000
90^thp	18.310	21.365	10.498	0.978	1.265	0.000	0.415	0.075	0.006	0.090	50.697	8.128	2.479	2.040	0.340	0.059	0.046	0.071
Stdev	6.362	7.743	7.760	1.905	1.481	0.000	0.317	0.168	0.157	0.644	20.262	6.089	5.377	0.000	0.148	5.720	0.732	0.693
Prev(%)	100.000	98.485	95.833	52.941	64.096	0.000	62.500	18.750	12.000	33.333	92.793	79.167	71.875	100.000	18.182	21.429	11.111	13.455

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	6.067	8.529	0.315	0.243	0.163	0.178	0.191	0.031	0.018	0.002
10^thp	0.430	1.164	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	13.251	17.617	0.184	0.921	0.466	0.444	0.219	0.100	0.065	0.000
Stdev	5.697	6.172	2.048	0.422	0.243	0.302	1.165	0.065	0.039	0.010
Prev(%)	96.104	96.104	46.753	81.818	81.818	70.130	46.753	41.558	32.468	3.896

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	8.379	13.318	0.285	0.383	0.420	0.231	0.166	0.179	0.129	0.001
10^thp	1.337	2.970	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	18.056	24.220	0.204	0.940	0.563	0.597	0.364	0.198	0.167	0.000
Stdev	7.071	8.320	2.322	0.932	1.550	0.363	0.514	1.085	0.565	0.006
Prev(%)	98.649	99.324	35.811	82.432	81.081	80.405	64.189	54.730	51.351	4.196

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