HOMD ::Order:Caryophanales

Order: Caryophanales

Full Lineage: Bacteria; Bacillota; Bacilli; Caryophanales Each rank name is a link to abundance plots at that rank:

Lower rank member(s): show[+]
Genera:

LINKS: Ecology Home | Life Page: Caryophanales

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.835	0.616	5.859	8.117	4.522	1.030	2.478	2.742	1.232	0.003
10^thp	0.072	0.033	0.608	1.603	1.100	0.071	0.298	0.214	0.148	0.000
90^thp	1.414	1.209	11.608	16.411	10.045	1.989	6.696	6.141	3.647	0.000
Stdev	1.763	1.054	4.963	6.372	4.487	0.951	2.797	3.239	1.270	0.012
Prev(%)	92.208	94.805	100.000	100.000	100.000	92.208	98.701	100.000	96.104	9.091

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	0.455	0.454	2.642	5.281	2.482	0.615	1.797	1.545	0.710	0.000
10^thp	0.029	0.023	0.285	0.700	0.514	0.129	0.159	0.162	0.063	0.000
90^thp	0.823	0.774	5.737	12.147	4.870	1.201	4.635	3.208	1.507	0.000
Stdev	0.797	0.918	2.665	5.352	2.741	0.480	2.028	2.019	0.734	0.002
Prev(%)	90.541	90.541	99.324	99.324	99.324	96.622	97.297	97.973	97.297	1.399

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.749	0.517	5.396	8.266	4.699	1.236	1.905	1.838	0.855	16.210	20.843	20.553	12.831	12.853	0.094	0.153	0.000	0.000
10^thp	0.064	0.023	0.744	1.664	1.015	0.098	0.134	0.177	0.110	2.700	1.583	1.557	0.608	0.603	0.000	0.000	0.000	0.000
90^thp	1.632	1.019	10.389	15.904	10.040	2.162	4.266	3.626	2.190	35.069	52.763	53.970	39.843	44.719	0.274	0.118	0.000	0.000
Stdev	1.456	0.842	4.438	6.978	4.577	2.742	2.721	2.303	0.872	14.771	20.711	21.246	19.267	21.193	0.165	0.638	0.000	0.000
Prev(%)	95.364	94.702	100.000	97.945	97.987	92.308	97.321	99.333	99.355	99.333	99.138	99.717	97.126	97.235	66.197	59.459	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.734	0.552	9.867	15.934	7.902	1.169	3.111	2.848	1.209	3.461	4.279	3.132	1.428	1.789	0.000	0.034	0.029	0.010
10^thp	0.078	0.049	1.260	2.750	1.204	0.188	0.225	0.269	0.139	0.179	0.077	0.051	0.020	0.000	0.000	0.000	0.000	0.000
90^thp	1.225	1.131	23.061	38.178	18.182	2.428	7.766	6.070	2.903	6.736	11.878	7.257	2.754	3.820	0.000	0.025	0.020	0.000
Stdev	2.866	0.856	11.246	14.549	8.270	1.129	4.938	4.553	1.366	7.048	8.567	7.025	3.508	4.069	0.000	0.207	0.314	0.106
Prev(%)	98.025	96.585	99.259	100.000	99.744	97.619	97.819	99.270	99.027	98.084	99.045	95.679	90.345	88.667	0.000	19.672	18.848	7.299

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.689	0.634	2.850	3.878	2.026	1.770	1.666	2.146	1.133	15.583
10^thp	0.016	0.065	0.208	0.330	0.344	0.159	0.204	0.173	0.178	2.050
90^thp	1.658	1.474	9.232	9.423	4.540	4.168	3.898	6.908	2.525	31.743
Stdev	1.008	0.944	3.513	6.357	1.883	1.886	2.232	2.955	1.007	23.190
Prev(%)	98.649	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.317	0.439	0.223	2.544	6.723	5.300	0.769	0.684	1.142	0.996	8.216	10.553	7.904	4.370	0.012	0.011	0.018	0.130
10^thp	0.026	0.010	0.000	0.428	0.935	5.300	0.383	0.000	0.116	0.140	0.000	1.210	0.551	4.370	0.000	0.000	0.000	0.000
90^thp	0.775	0.750	0.490	5.500	15.785	5.300	1.320	1.470	2.452	2.245	21.627	23.101	16.858	4.370	0.020	0.007	0.000	0.300
Stdev	0.329	2.085	0.433	2.221	7.205	0.000	0.495	0.712	1.296	1.047	12.642	10.993	7.543	0.000	0.033	0.040	0.097	0.462
Prev(%)	95.833	92.172	58.333	100.000	99.202	100.000	100.000	81.250	92.000	99.061	86.937	100.000	100.000	100.000	18.182	14.286	9.091	19.818

[Family:Bacillaceae]	[Family:Caryophanaceae]	[Family:Gemellaceae]	[Family:Listeriaceae]	[Family:Paenibacillaceae]
[Family:Staphylococcaceae]

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