HOMD ::klass::Saccharimonadia

Class: Saccharimonadia

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Patescibacteria; Saccharimonadia
Lower rank member(s): [Order:Saccharimonadales]
Genera:

LINKS: Ecology Home | Life Page: Saccharimonadia

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	2.663	1.952	0.536	0.455	0.686	9.474	1.482	1.663	1.688	0.019	0.044	0.027	0.132	0.035	0.000	0.000	0.000	0.000
10^thp	0.079	0.020	0.000	0.000	0.000	0.834	0.072	0.135	0.046	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	6.180	5.293	1.162	0.879	1.604	22.106	3.322	3.651	4.325	0.031	0.028	0.010	0.166	0.043	0.000	0.000	0.000	0.000
Stdev	3.880	2.458	1.679	1.012	0.812	10.101	1.703	2.321	2.088	0.103	0.255	0.210	0.664	0.181	0.000	0.000	0.000	0.000
Prev(%)	97.351	91.391	70.629	85.616	89.262	98.462	94.643	98.667	96.774	18.333	21.264	11.331	23.563	14.286	0.000	0.000	0.000	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.026	0.031	0.000	0.000	0.016	0.331	0.035	0.024	0.026	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.062	0.094	0.000	0.000	0.049	0.854	0.096	0.070	0.075	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Stdev	0.073	0.061	0.000	0.000	0.042	0.731	0.076	0.061	0.061	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
Prev(%)	39.259	43.171	0.000	0.000	25.320	77.976	42.991	36.010	40.876	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	4.575	2.986	0.458	0.418	0.259	0.764	0.805	0.807	0.461	0.003
10^thp	0.021	0.033	0.002	0.007	0.010	0.042	0.094	0.039	0.002	0.000
90^thp	14.415	6.572	2.262	0.901	0.520	1.242	1.480	2.096	1.007	0.001
Stdev	6.904	5.847	0.924	0.913	0.445	2.210	1.139	1.373	0.631	0.009
Prev(%)	97.297	100.000	93.023	100.000	96.429	100.000	100.000	100.000	92.500	10.000

HMP Metaphlan (not published)

No Notes

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	2.896	2.266	0.284	0.389	0.777	12.121	2.367	1.901	2.154	0.007
10^thp	0.025	0.018	0.000	0.000	0.045	1.345	0.136	0.068	0.052	0.000
90^thp	6.317	6.197	1.118	0.829	1.788	30.678	6.002	5.067	5.768	0.027
Stdev	4.646	3.245	0.708	0.721	0.789	12.855	2.508	2.699	2.579	0.025
Prev(%)	92.208	89.610	51.948	83.117	94.805	98.701	94.805	97.403	92.208	14.286

Eren V3-V5 www.pnas.org

No Notes

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