HOMD ::klass::Gammaproteobacteria

Class: Gammaproteobacteria

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria
Lower rank member(s): [Order:Cardiobacteriales] [Order:Enterobacterales] [Order:Lysobacterales] [Order:Pasteurellales] [Order:Pseudomonadales]
Genera:

LINKS: Ecology Home | Life Page: Gammaproteobacteria

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.200	1.775	6.711	3.860	1.952	2.523	2.253	1.573	1.854	1.412	0.125	0.130	0.979	0.865	0.469	0.222	0.054	0.000
10^thp	0.061	0.052	0.217	0.224	0.129	0.070	0.066	0.025	0.029	0.000	0.000	0.000	0.000	0.004	0.000	0.000	0.000	0.000
90^thp	2.613	3.629	16.800	9.194	4.769	6.447	4.118	3.879	5.164	2.059	0.261	0.281	1.928	1.918	1.427	0.722	0.154	0.000
Stdev	1.915	4.044	7.138	4.628	2.297	4.267	6.541	2.519	3.554	5.705	0.413	0.487	2.464	2.125	1.331	0.498	0.169	0.000
Prev(%)	96.689	98.675	99.301	97.945	97.987	95.385	97.321	95.333	96.129	76.000	57.184	58.640	86.782	89.862	49.296	47.297	26.316	0.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	7.632	11.741	31.163	28.753	18.350	14.448	11.626	11.809	13.927	5.975	2.369	2.527	5.147	7.184	0.159	0.164	0.000	0.105
10^thp	1.083	1.787	3.336	8.603	5.722	4.070	1.000	1.466	1.373	0.032	0.000	0.000	0.296	0.358	0.000	0.000	0.000	0.000
90^thp	17.307	26.208	67.764	55.406	32.992	26.647	24.343	24.262	30.143	16.367	3.585	4.383	11.857	19.771	0.284	0.167	0.000	0.201
Stdev	7.249	10.469	24.517	18.235	11.784	9.686	13.249	10.770	11.686	13.833	7.524	8.583	9.613	12.381	0.721	0.780	0.000	0.346
Prev(%)	99.753	99.756	100.000	99.752	100.000	100.000	99.688	100.000	100.000	93.870	86.943	87.037	97.241	95.333	25.862	24.590	0.000	45.012

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	2.657	3.280	13.884	10.088	6.741	4.761	3.730	3.711	5.791	0.339
10^thp	0.036	0.081	0.969	1.678	1.594	0.216	0.197	0.184	0.249	0.000
90^thp	6.920	9.382	35.942	24.722	13.555	10.756	10.326	9.607	15.849	1.290
Stdev	4.314	4.549	14.868	9.785	5.207	4.425	5.233	4.504	7.080	0.803
Prev(%)	98.649	100.000	100.000	100.000	100.000	98.000	100.000	100.000	100.000	45.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	5.542	6.970	1.015	18.592	20.993	11.610	9.148	9.438	5.383	5.385	7.452	0.080	0.222	14.950	0.404	1.151	0.330	0.312
10^thp	1.670	1.850	0.043	4.548	4.280	11.610	3.963	0.260	0.796	0.575	0.000	0.000	0.000	14.950	0.000	0.000	0.000	0.000
90^thp	8.937	14.145	2.961	37.806	41.445	11.610	18.735	23.880	11.584	12.515	22.706	0.220	0.259	14.950	0.630	3.731	0.426	0.220
Stdev	5.786	5.804	1.648	13.708	15.109	0.000	7.635	15.240	5.354	5.339	18.953	0.177	0.711	0.000	0.884	2.048	1.432	4.182
Prev(%)	100.000	100.000	91.667	100.000	99.734	100.000	100.000	100.000	100.000	99.765	51.802	58.333	43.750	100.000	63.636	71.429	33.333	50.545

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.253	2.327	6.446	3.402	2.131	2.790	2.843	1.930	2.606	0.011
10^thp	0.035	0.050	0.905	0.395	0.248	0.216	0.027	0.048	0.022	0.000
90^thp	2.793	4.085	16.640	8.126	4.742	8.649	5.310	4.145	7.745	0.050
Stdev	2.223	5.791	6.563	4.435	3.072	4.024	9.378	3.138	4.561	0.032
Prev(%)	93.506	97.403	100.000	97.403	100.000	96.104	94.805	94.805	93.506	18.182

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	5.304	7.591	22.238	13.316	9.043	10.918	6.903	8.726	9.593	0.055
10^thp	0.652	1.453	7.889	4.165	2.535	4.084	0.947	1.063	1.332	0.000
90^thp	11.754	16.896	38.428	24.721	16.059	19.890	13.701	17.545	20.775	0.154
Stdev	5.374	6.657	11.507	8.849	5.952	6.754	8.022	7.268	7.278	0.201
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	30.769

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