HOMD ::Class:Alphaproteobacteria

Class: Alphaproteobacteria

Full Lineage: Bacteria; Pseudomonadota; Alphaproteobacteria Each rank name is a link to abundance plots at that rank:

Lower rank member(s): [Order:Caulobacterales] [Order:Hyphomicrobiales] [Order:Rhodobacterales] [Order:Rhodospirillales] [Order:Sphingomonadales]
Genera:

LINKS: Ecology Home | Life Page: Alphaproteobacteria

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

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Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.000	0.000	0.029	0.038	0.007	0.134	0.040	0.000	0.000	0.111	0.121	0.163	1.283	0.943	0.028	0.034	0.003	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.004	0.001	0.103	0.029	0.000	0.000	0.182	0.230	0.208	3.341	2.354	0.101	0.042	0.000	0.000
Stdev	0.000	0.000	0.296	0.394	0.034	0.816	0.225	0.000	0.000	0.496	0.622	0.690	2.704	2.145	0.063	0.113	0.011	0.000
Prev(%)	0.000	0.000	6.294	10.274	10.067	23.077	14.286	0.000	0.000	48.333	52.011	50.992	82.759	69.124	32.394	24.324	7.895	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.023	0.028	0.070	0.011	0.090	0.073	0.221	0.026	0.009	0.228	0.332	0.437	1.503	1.379	0.015	0.019	0.015	0.028
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.000	0.040	0.050	0.163	0.000	0.000	0.439	0.563	1.088	4.020	3.227	0.028	0.023	0.010	0.000
Stdev	0.185	0.348	0.633	0.071	0.615	0.553	1.242	0.259	0.089	1.020	1.694	1.468	3.514	3.710	0.093	0.135	0.122	0.408
Prev(%)	7.160	4.634	6.420	6.700	14.066	14.881	22.430	5.839	1.946	47.510	47.134	55.864	81.379	78.000	17.241	19.126	11.518	0.730

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	0.002	0.001	0.001	0.001	0.002	0.000	0.001	0.235	0.000	0.000
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	0.002	0.000	0.001	0.004	0.010	0.000	0.004	0.002	0.000	0.000
Stdev	0.012	0.002	0.004	0.001	0.006	0.000	0.003	1.309	0.001	0.001
Prev(%)	12.162	5.882	13.953	14.286	17.857	4.000	18.182	16.129	7.500	5.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	0.047	0.000	0.000	0.000	0.004	0.000	0.000	0.000	0.000	0.000	0.004	0.000	0.004	1.290	0.028	0.051	0.024	0.037
10^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	1.290	0.000	0.000	0.000	0.000
90^thp	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	1.290	0.000	0.187	0.000	0.000
Stdev	0.229	0.003	0.000	0.000	0.050	0.000	0.000	0.000	0.000	0.001	0.027	0.000	0.014	0.000	0.093	0.086	0.137	0.479
Prev(%)	4.167	0.505	0.000	0.000	1.330	0.000	0.000	0.000	0.000	0.469	2.252	0.000	9.375	100.000	9.091	28.571	5.051	4.000

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