HOMD ::Genus:Haemophilus

Genus: Haemophilus

Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus Each rank name is a link to abundance plots at that rank:

Lower rank member(s): show[+]

LINKS: Ecology Home | Life Page: Haemophilus

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.121	2.161	6.436	3.396	2.126	2.759	2.641	1.928	2.606	0.011
10^thp	0.000	0.010	0.905	0.362	0.248	0.163	0.027	0.048	0.022	0.000
90^thp	2.739	3.993	16.640	8.126	4.631	8.649	4.919	4.145	7.745	0.050
Stdev	2.195	5.760	6.540	4.437	3.070	4.037	9.301	3.136	4.560	0.032
Prev(%)	81.818	89.610	100.000	97.403	100.000	96.104	94.805	94.805	93.506	18.182

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	3.375	5.328	20.987	12.368	8.723	9.954	5.806	7.964	9.521	0.055
10^thp	0.185	0.379	6.295	3.289	2.445	3.398	0.686	0.912	1.302	0.000
90^thp	6.773	14.363	35.777	23.478	15.863	18.735	12.613	15.906	20.727	0.154
Stdev	4.514	5.824	11.625	8.677	5.903	6.476	5.252	6.799	7.225	0.201
Prev(%)	97.297	99.324	100.000	100.000	100.000	100.000	100.000	100.000	100.000	30.070

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	0.821	1.307	6.652	3.784	1.918	2.363	1.675	1.462	1.854	0.095	0.048	0.049	0.144	0.326	0.000	0.000	0.000	0.000
10^thp	0.000	0.011	0.217	0.185	0.117	0.032	0.063	0.025	0.029	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.016	2.545	16.789	9.194	4.769	6.285	3.670	3.742	5.164	0.130	0.095	0.092	0.366	0.414	0.000	0.000	0.000	0.000
Stdev	1.725	3.894	7.115	4.632	2.297	4.190	4.875	2.316	3.554	0.683	0.151	0.195	0.349	1.699	0.000	0.000	0.000	0.000
Prev(%)	88.742	91.391	99.301	97.945	97.987	91.538	97.321	95.333	96.129	46.667	37.069	37.677	54.598	56.682	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	5.087	8.563	30.668	27.815	17.912	13.324	9.772	11.267	13.883	0.616	1.344	1.769	2.524	3.078	0.000	0.000	0.000	0.099
10^thp	0.252	0.494	2.766	7.484	5.548	3.494	0.866	1.373	1.282	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	13.506	19.636	67.728	54.875	32.681	25.236	22.560	24.160	30.143	1.589	1.062	0.929	3.905	6.314	0.000	0.000	0.000	0.201
Stdev	6.502	9.795	24.642	18.539	11.629	9.303	10.144	10.442	11.689	1.388	5.633	7.715	8.357	8.670	0.000	0.000	0.000	0.321
Prev(%)	99.012	99.756	100.000	99.752	100.000	99.702	99.688	99.757	100.000	74.713	59.554	55.556	80.690	77.333	0.000	0.000	0.000	45.012

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	1.651	2.216	13.601	9.311	6.134	4.531	3.579	3.456	5.738	0.014
10^thp	0.018	0.037	0.969	1.659	1.140	0.209	0.195	0.184	0.249	0.000
90^thp	3.027	7.283	35.004	19.803	12.417	10.754	9.718	9.339	15.844	0.044
Stdev	4.105	3.667	14.575	9.293	5.070	4.296	4.931	4.284	7.039	0.036
Prev(%)	95.946	100.000	100.000	100.000	100.000	98.000	100.000	100.000	100.000	20.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	2.688	3.509	0.077	17.782	20.277	11.610	7.317	4.588	5.252	5.283	0.233	0.054	0.125	0.000	0.034	0.181	0.087	0.042
10^thp	0.244	0.185	0.000	3.944	3.545	11.610	3.422	0.175	0.768	0.540	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	4.182	8.585	0.057	34.730	40.930	11.610	13.964	9.420	10.440	12.470	0.461	0.101	0.039	0.000	0.000	0.630	0.040	0.080
Stdev	5.856	4.775	0.255	13.059	15.179	0.000	5.319	7.103	5.263	5.306	0.821	0.127	0.602	0.000	0.112	0.453	0.629	0.324
Prev(%)	100.000	99.495	37.500	100.000	99.202	100.000	100.000	93.750	100.000	99.296	27.477	45.833	25.000	0.000	9.091	21.429	14.646	26.909

[Species:Haemophilus aegyptius]	[Species:Haemophilus ducreyi]	[Species:Haemophilus haemolyticus]	[Species:Haemophilus influenzae]	[Species:Haemophilus parahaemolyticus]
[Species:Haemophilus parainfluenzae]	[Species:Haemophilus paraphrohaemolyticus]	[Species:Haemophilus pittmaniae]	[Species:Haemophilus sp. HMT-036]	[Species:Haemophilus sputorum]

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