HOMD ::family::Streptococcaceae

Family: Streptococcaceae

Each rank name is a link to abundance plots at that rank:
Full Lineage: Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae
Lower rank member(s): [Genus:Lactococcus] [Genus:Streptococcus]

LINKS: Ecology Home | Life Page: Streptococcaceae

Oral:	SUBP-- Subgingival Plaque	SUPP -- Supragingival Plaque	PERIO -- Periodontal	AKE -- Attached Keratinized Gingiva	BMU -- Buccal Mucosa
Oral:	HPA -- Hard Palate	SAL -- Saliva	THR -- Throat	PTO -- Palatine Tonsils	TDO -- Tongue Dorsum
Nasal:	ANA -- Anterior Nares
Skin:	LRC -- L_Retroauricular Crease	RRC -- R_Retroauricular Crease	LAF -- L_Antecubital Fossa	RAF -- R_Antecubital Fossa
Vaginal:	VIN -- Vaginal Introitus	MVA -- Mid Vagina	PFO -- Posterior Fornix
Gut:	STO -- Stool

Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

HMP 16S RefSeq (V1-V3) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	13.750	15.852	52.232	52.039	44.755	14.960	22.770	21.008	18.677	2.603	1.164	1.095	6.153	5.867	0.700	0.501	0.230	20.504
10^thp	4.307	6.215	26.522	32.360	22.694	3.998	7.490	6.371	7.298	0.108	0.012	0.004	0.259	0.463	0.000	0.008	0.000	1.583
90^thp	25.214	26.882	76.204	74.536	68.253	27.501	44.690	42.622	34.034	5.598	3.386	2.544	14.702	14.713	2.295	0.708	0.320	43.624
Stdev	10.430	8.547	19.696	16.076	16.864	9.724	15.202	15.610	10.089	5.836	2.140	2.944	9.078	6.595	2.435	1.970	0.894	16.877
Prev(%)	100.000	100.000	100.000	100.000	100.000	99.231	100.000	100.000	100.000	97.667	92.241	90.085	96.552	97.235	71.831	90.541	53.947	100.000

HMP 16S RefSeq (V3-V5) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	4.935	7.649	4.712	4.672	2.549	1.207	0.630	0.923	0.454	0.307	0.463	0.339	1.020	1.193	0.127	0.061	0.053	0.009
10^thp	0.830	2.022	0.218	0.719	0.278	0.186	0.031	0.085	0.046	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	10.553	15.837	11.942	10.310	6.518	2.512	1.631	1.957	1.007	0.760	0.603	0.554	2.407	2.763	0.013	0.000	0.000	0.000
Stdev	5.019	5.990	6.633	5.166	3.612	1.375	1.268	1.971	0.467	0.863	1.741	1.681	2.084	4.610	0.937	0.524	0.402	0.103
Prev(%)	99.753	100.000	98.519	100.000	98.977	99.107	93.458	97.080	97.324	59.387	53.822	45.062	74.483	73.333	11.494	7.104	8.377	7.299

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	20.643	31.038	57.875	57.877	49.650	43.518	39.968	38.171	42.144	0.681
10^thp	2.938	15.978	26.827	33.080	29.102	18.036	19.980	11.644	20.187	0.000
90^thp	47.248	49.412	89.708	82.863	76.147	74.379	63.304	62.164	75.129	1.604
Stdev	16.127	14.345	23.753	18.518	19.114	22.526	16.260	19.966	22.202	1.841
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	85.000

HMP Metaphlan (not published)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	7.112	7.580	2.765	35.983	34.726	41.210	10.062	7.403	9.052	12.178	1.137	0.236	0.401	3.850	0.154	0.744	0.175	0.160
10^thp	1.425	2.095	0.142	10.874	15.325	41.210	4.624	2.390	2.996	4.060	0.000	0.000	0.000	3.850	0.000	0.000	0.000	0.000
90^thp	13.045	14.655	7.147	70.324	58.450	41.210	15.200	13.925	11.964	22.500	2.900	0.207	0.555	3.850	0.670	1.766	0.123	0.181
Stdev	5.114	5.197	4.081	23.619	16.693	0.000	5.032	5.432	13.148	8.316	3.610	0.586	1.521	0.000	0.292	1.448	0.957	1.244
Prev(%)	100.000	99.747	95.833	100.000	99.734	100.000	100.000	100.000	100.000	99.765	45.495	66.667	56.250	100.000	36.364	42.857	19.697	51.636

Eren V1-V3 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	15.855	18.508	60.186	60.540	52.254	17.656	29.843	31.353	25.704	0.071
10^thp	5.316	8.038	31.231	37.439	32.658	4.234	9.725	8.899	10.171	0.000
90^thp	30.197	33.761	84.052	82.770	76.284	31.688	53.691	59.628	46.148	0.193
Stdev	11.800	10.032	20.512	16.947	16.791	10.892	17.929	20.607	13.438	0.103
Prev(%)	100.000	100.000	100.000	100.000	100.000	98.701	100.000	100.000	100.000	63.636

Eren V3-V5 www.pnas.org

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	11.343	15.133	47.345	53.562	42.633	13.836	27.269	24.424	21.267	0.032
10^thp	2.278	5.085	22.592	30.040	21.856	5.751	7.213	7.022	6.729	0.000
90^thp	25.949	28.608	73.344	76.145	69.637	23.509	52.137	48.023	40.401	0.109
Stdev	8.898	10.212	19.781	17.084	17.323	7.785	17.660	16.421	13.652	0.060
Prev(%)	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	44.755

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