HOMD ::Family:Pasteurellaceae

Family: Pasteurellaceae

Full Lineage: Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae Each rank name is a link to abundance plots at that rank:

Lower rank member(s): [Genus:Aggregatibacter] [Genus:Haemophilus]

LINKS: Ecology Home | Life Page: Pasteurellaceae

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Oral:

SUBP-- Subgingival Plaque

SUPP -- Supragingival Plaque

PERIO -- Periodontal

AKE -- Attached Keratinized Gingiva

BMU -- Buccal Mucosa

HPA -- Hard Palate

SAL -- Saliva

THR -- Throat

PTO -- Palatine Tonsils

TDO -- Tongue Dorsum

Nasal:

ANA -- Anterior Nares

Skin:

LRC -- L_Retroauricular Crease

RRC -- R_Retroauricular Crease

LAF -- L_Antecubital Fossa

RAF -- R_Antecubital Fossa

Vaginal:

VIN -- Vaginal Introitus

MVA -- Mid Vagina

PFO -- Posterior Fornix

Gut:

STO -- Stool

Prev - Prevalence
10^thp - 10^th percentile
90^thp - 90^th percentile
ND - less than 0.001%

Show Legend

Eren V1-V3 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	1.121	2.161	6.436	3.396	2.126	2.759	2.641	1.928	2.606	0.011
10^thp	0.000	0.010	0.905	0.362	0.248	0.163	0.027	0.048	0.022	0.000
90^thp	2.739	3.993	16.640	8.126	4.631	8.649	4.919	4.145	7.745	0.050
Stdev	2.195	5.760	6.540	4.437	3.070	4.037	9.301	3.136	4.560	0.032
Prev(%)	81.818	89.610	100.000	97.403	100.000	96.104	94.805	94.805	93.506	18.182

Eren V3-V5 www.pnas.org (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	STO
Avg (%)	5.072	7.287	22.231	13.284	8.966	10.898	6.015	8.720	9.591	0.055
10^thp	0.492	1.204	7.889	4.164	2.535	4.075	0.838	1.063	1.332	0.000
90^thp	11.754	16.768	38.428	24.715	16.027	19.890	12.953	17.545	20.765	0.154
Stdev	5.377	6.649	11.515	8.866	5.914	6.756	5.311	7.267	7.277	0.201
Prev(%)	99.324	100.000	100.000	100.000	100.000	100.000	100.000	100.000	100.000	30.769

Human Microbiome Project 16S RefSeq (V1-V3) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	1.000	1.563	6.691	3.826	1.922	2.450	1.684	1.570	1.854	0.095	0.048	0.049	0.144	0.326	0.000	0.000	0.000	0.000
10^thp	0.020	0.022	0.217	0.185	0.117	0.034	0.066	0.025	0.029	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	2.294	3.322	16.800	9.194	4.769	6.447	3.670	3.879	5.164	0.130	0.095	0.092	0.366	0.414	0.000	0.000	0.000	0.000
Stdev	1.868	4.017	7.123	4.637	2.301	4.282	4.875	2.520	3.554	0.683	0.151	0.196	0.349	1.699	0.000	0.000	0.000	0.000
Prev(%)	93.377	96.026	99.301	97.945	97.987	92.308	97.321	95.333	96.129	46.667	37.069	37.677	54.598	56.682	0.000	0.000	0.000	0.000

Human Microbiome Project 16S RefSeq (V3-V5) (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	LAF	RAF	VIN	MVA	PFO	STO
Avg (%)	7.260	11.265	30.953	28.726	18.126	14.360	10.066	11.809	13.910	0.616	1.525	1.769	2.524	3.078	0.000	0.000	0.000	0.099
10^thp	0.797	1.390	3.281	8.482	5.634	4.052	0.905	1.466	1.282	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	16.969	26.159	67.728	55.406	32.968	26.634	22.677	24.262	30.143	1.589	1.508	0.929	3.905	6.314	0.000	0.000	0.000	0.201
Stdev	7.257	10.553	24.565	18.243	11.656	9.689	10.401	10.770	11.701	1.388	5.912	7.715	8.357	8.670	0.000	0.000	0.000	0.321
Prev(%)	99.753	99.756	100.000	99.752	100.000	99.702	99.688	100.000	100.000	74.713	61.783	55.556	80.690	77.333	0.000	0.000	0.000	45.012

Dewhirst (35x9) (not published)

No Notes

	SUBP	SUPP	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA
Avg (%)	2.580	3.176	13.881	10.083	6.721	4.758	3.725	3.578	5.790	0.014
10^thp	0.028	0.054	0.969	1.678	1.587	0.215	0.197	0.184	0.249	0.000
90^thp	6.538	9.318	35.937	24.717	13.488	10.755	10.323	9.604	15.848	0.044
Stdev	4.275	4.547	14.868	9.785	5.193	4.424	5.221	4.414	7.080	0.036
Prev(%)	98.649	100.000	100.000	100.000	100.000	98.000	100.000	100.000	100.000	20.000

Human Microbiome Project Metaphlan (not published) (data from healthy subjects)

No Notes

	SUBP	SUPP	PERIO	AKE	BMU	HPA	SAL	THR	PTO	TDO	ANA	LRC	RRC	RAF	VIN	MVA	PFO	STO
Avg (%)	3.948	5.479	0.602	18.521	20.820	11.610	9.039	4.688	5.342	5.335	0.238	0.066	0.165	0.000	0.034	0.299	0.090	0.044
10^thp	0.718	0.750	0.000	4.548	4.140	11.610	3.735	0.175	0.796	0.560	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000
90^thp	6.384	11.905	1.753	37.570	41.110	11.610	18.729	9.845	11.208	12.475	0.468	0.101	0.229	0.000	0.000	1.127	0.040	0.080
Stdev	5.896	5.788	1.173	13.702	15.097	0.000	7.703	7.165	5.329	5.326	0.825	0.174	0.633	0.000	0.112	0.753	0.635	0.336
Prev(%)	100.000	99.495	54.167	100.000	99.468	100.000	100.000	93.750	100.000	99.531	27.477	45.833	25.000	0.000	9.091	21.429	14.646	26.909

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