Genome Meta Information: Absconditicoccaceae [G1] bacterium HMT-345 ERR589616_bin.43_CONCOCT_v1.1_MAG (GCA_938045525.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_938045525.1 | ||
| HOMD Taxon-ID | HMT-345 | ||
| Species Name (in use by HOMD) | Absconditicoccaceae [G1] bacterium HMT-345 | ||
| Organism Name (as deposited) | HMT-345 Absconditicoccaceae [G1] bacterium HMT-345 ERR589616_bin.43_CONCOCT_v1.1_MAG | ||
| Strain or Isolate | ERR589616_bin.43_CONCOCT_v1.1_MAG | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345; s__HOT-345 sp003260355 |
||
| Sequencing Technology | Illumina HiSeq 2000 | ||
| Genome Coverage | 13.0x | ||
| Contigs |
|
||
| Total Sequence Length | 1,161,792 (bp) | ||
| GC Percentage | 38.34 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/045/525/GCA_938045525.1_ERR589616_bin.43_CONCOCT_v1.1_MAG | ||
| CDS | 2176 | ||
| Genes | 2217 | ||
| mRNA | 2217 | ||
| misc RNA | 0 | ||
| rRNA | 2 | ||
| tRNA | 39 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 73.03 % | ||
| CheckM Contamination | 1.12 % | ||
| CheckM2 Completeness | 95.69 % | ||
| CheckM2 Contamination | 2.03 % | ||
| Difference
between CheckM and CheckM2 Completeness |
26.9 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes (Beta) |
View in Anvi`o:
Absconditicoccaceae_G1_G2__bacterium__HMT_345_874_875_991
(Interactive)
View SVG Image |
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| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ERR589616_bin.43_CONCOCT_v1.1_ |
| GenBank Assembly Accession | GCA_938045525.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMEA14084808 [NCBI] |
| BioProject | PRJEB51075 [NCBI] |
| Submitter | European Bioinformatics Institute |
| Submission Date | 2023-01-04T08:31:44.160 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CALIAX01 |
| NCBI TaxID | 77133 |
| Isolation Source | human gut metagenome |
| Geo Location | China |
