Genome Meta Information: Alloprevotella sp. HMT-473 ERR589357_bin.83_CONCOCT_v1.1_MAG (GCA_938021135.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_938021135.1 | ||
| HOMD Taxon-ID | HMT-473 | ||
| Species Name (in use by HOMD) | Alloprevotella sp. HMT-473 | ||
| Organism Name (as deposited) | HMT-473 Alloprevotella sp. HMT-473 ERR589357_bin.83_CONCOCT_v1.1_MAG | ||
| Strain or Isolate | ERR589357_bin.83_CONCOCT_v1.1_MAG | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella; s__Alloprevotella sp000318095 |
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| Sequencing Technology | Illumina HiSeq 2000 | ||
| Genome Coverage | 15.0x | ||
| Contigs |
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| Total Sequence Length | 2,642,809 (bp) | ||
| GC Percentage | 46.15 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/021/135/GCA_938021135.1_ERR589357_bin.83_CONCOCT_v1.1_MAG | ||
| CDS | 2080 | ||
| Genes | 2144 | ||
| mRNA | 2144 | ||
| misc RNA | 6 | ||
| rRNA | 0 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 96.5 % | ||
| CheckM Contamination | 1.47 % | ||
| CheckM2 Completeness | 96.86 % | ||
| CheckM2 Contamination | 0.34 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP Site] | ||
| Pangenomes (Beta) |
View in Anvi`o:
Alloprevotella__sp_HMT_473__HMT_473
(Interactive)
View SVG Image |
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| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ERR589357_bin.83_CONCOCT_v1.1_ |
| GenBank Assembly Accession | GCA_938021135.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMEA14084530 [NCBI] |
| BioProject | PRJEB51075 [NCBI] |
| Submitter | European Bioinformatics Institute |
| Submission Date | 2023-01-04T08:31:33.960 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CALIHJ01 |
| NCBI TaxID | 1283315 |
| Isolation Source | human gut metagenome |
| Geo Location | China |
