Genome Meta Information: Absconditicoccaceae [G1] bacterium HMT-875 SRR8114094_bin.42_CONCOCT_v1.1_MAG (GCA_937989475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_937989475.1 | ||
| HOMD Taxon-ID | HMT-875 | ||
| Species Name (in use by HOMD) | Absconditicoccaceae [G1] bacterium HMT-875 | ||
| Organism Name (as deposited) | HMT-875 Absconditicoccaceae [G1] bacterium HMT-875 SRR8114094_bin.42_CONCOCT_v1.1_MAG | ||
| Strain or Isolate | SRR8114094_bin.42_CONCOCT_v1.1_MAG | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345; s__HOT-345 sp013333295 |
||
| Sequencing Technology | Illumina HiSeq 4000 | ||
| Genome Coverage | 27.0x | ||
| Contigs |
|
||
| Total Sequence Length | 985,380 (bp) | ||
| GC Percentage | 34.99 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/989/475/GCA_937989475.1_SRR8114094_bin.42_CONCOCT_v1.1_MAG | ||
| CDS | 1770 | ||
| Genes | 1809 | ||
| mRNA | 1809 | ||
| misc RNA | 2 | ||
| rRNA | 0 | ||
| tRNA | 36 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 73.6 % | ||
| CheckM Contamination | 1.12 % | ||
| CheckM2 Completeness | 95.53 % | ||
| CheckM2 Contamination | 2.26 % | ||
| Difference
between CheckM and CheckM2 Completeness |
25.9 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes (Beta) |
View in Anvi`o:
Absconditicoccaceae_G1_G2__bacterium__HMT_345_874_875_991
(Interactive)
View SVG Image |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | SRR8114094_bin.42_CONCOCT_v1.1 |
| GenBank Assembly Accession | GCA_937989475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMEA14086119 [NCBI] |
| BioProject | PRJEB51075 [NCBI] |
| Submitter | European Bioinformatics Institute |
| Submission Date | 2023-01-04T08:32:31.143 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CALKRR01 |
| NCBI TaxID | 77133 |
| Isolation Source | human gut metagenome |
| Geo Location | Luxembourg |
