Genome Meta Information: Atopobium minutum ERR1018188_bin.3_CONCOCT_v1.1_MAG (GCA_937975845.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_937975845.1 | ||
| HOMD Taxon-ID | HMT-674 | ||
| Species Name (in use by HOMD) | Atopobium minutum | ||
| Organism Name (as deposited) | HMT-674 Atopobium minutum ERR1018188_bin.3_CONCOCT_v1.1_MAG | ||
| Strain or Isolate | ERR1018188_bin.3_CONCOCT_v1.1_MAG | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Atopobium; s__Atopobium minutum |
||
| Sequencing Technology | Illumina HiSeq 2000 | ||
| Genome Coverage | 12.0x | ||
| Contigs |
|
||
| Total Sequence Length | 1,629,170 (bp) | ||
| GC Percentage | 48.86 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/975/845/GCA_937975845.1_ERR1018188_bin.3_CONCOCT_v1.1_MAG | ||
| CDS | 1458 | ||
| Genes | 1510 | ||
| mRNA | 1510 | ||
| misc RNA | 7 | ||
| rRNA | 0 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.93 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 99.92 % | ||
| CheckM2 Contamination | 0.36 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ERR1018188_bin.3_CONCOCT_v1.1_ |
| GenBank Assembly Accession | GCA_937975845.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_937975845.1 [NCBI] |
| BioSample | SAMEA14083289 [NCBI] |
| BioProject | PRJEB51075 [NCBI] |
| Submitter | European Bioinformatics Institute |
| Submission Date | 2023-01-04T08:30:52.000 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CALJSN01 |
| NCBI TaxID | 1381 |
| Isolation Source | human gut metagenome |
| Geo Location | China |
