Genome Meta Information: Abiotrophia defectiva ERR589701_bin.29_CONCOCT_v1.1_MAG (GCA_937930255.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_937930255.1 | ||
| HOMD Taxon-ID | HMT-389 | ||
| Species Name (in use by HOMD) | Abiotrophia defectiva | ||
| Organism Name (as deposited) | HMT-389 Abiotrophia defectiva ERR589701_bin.29_CONCOCT_v1.1_MAG | ||
| Strain or Isolate | ERR589701_bin.29_CONCOCT_v1.1_MAG | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia; s__Abiotrophia defectiva |
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| Sequencing Technology | Illumina HiSeq 2000 | ||
| Genome Coverage | 10.0x | ||
| Contigs |
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| Total Sequence Length | 2,043,240 (bp) | ||
| GC Percentage | 46.81 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/930/255/GCA_937930255.1_ERR589701_bin.29_CONCOCT_v1.1_MAG | ||
| CDS | 1854 | ||
| Genes | 1892 | ||
| mRNA | 1892 | ||
| misc RNA | 19 | ||
| rRNA | 2 | ||
| tRNA | 16 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.51 % | ||
| CheckM Completeness | 98.32 % | ||
| CheckM Contamination | 0.54 % | ||
| CheckM2 Completeness | 98.55 % | ||
| CheckM2 Contamination | 1.53 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP Site] | ||
| Pangenomes (Beta) |
View in Anvi`o:
Abiotrophia__defectiva__HMT_389
(Interactive)
View SVG Image |
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| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ERR589701_bin.29_CONCOCT_v1.1_ |
| GenBank Assembly Accession | GCA_937930255.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_937930255.1 [NCBI] |
| BioSample | SAMEA14084946 [NCBI] |
| BioProject | PRJEB51075 [NCBI] |
| Submitter | European Bioinformatics Institute |
| Submission Date | 2023-01-04T08:31:49.936 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CALGLG01 |
| NCBI TaxID | 46125 |
| Isolation Source | human gut metagenome |
| Geo Location | China |
