Genome Meta Information: Alloprevotella sp. HMT-413 SRR1952431_bin.72_CONCOCT_v1.1_MAG (GCA_937891685.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_937891685.1 | ||
| HOMD Taxon-ID | HMT-413 | ||
| Species Name (in use by HOMD) | Alloprevotella sp. HMT-413 | ||
| Organism Name (as deposited) | HMT-413 Alloprevotella sp. HMT-413 SRR1952431_bin.72_CONCOCT_v1.1_MAG | ||
| Strain or Isolate | SRR1952431_bin.72_CONCOCT_v1.1_MAG | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella; s__Alloprevotella massiliensis |
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| Sequencing Technology | Illumina HiSeq 2000 | ||
| Genome Coverage | 45.0x | ||
| Contigs |
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| Total Sequence Length | 2,561,453 (bp) | ||
| GC Percentage | 47.34 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/891/685/GCA_937891685.1_SRR1952431_bin.72_CONCOCT_v1.1_MAG | ||
| CDS | 2017 | ||
| Genes | 2061 | ||
| mRNA | 2061 | ||
| misc RNA | 6 | ||
| rRNA | 1 | ||
| tRNA | 36 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.3 % | ||
| CheckM Contamination | 0.74 % | ||
| CheckM2 Completeness | 96.79 % | ||
| CheckM2 Contamination | 0.41 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP Site] | ||
| Pangenomes (Beta) |
View in Anvi`o:
Alloprevotella__sp_HMT_413__HMT_413
(Interactive)
View SVG Image |
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| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | SRR1952431_bin.72_CONCOCT_v1.1 |
| GenBank Assembly Accession | GCA_937891685.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMEA14075697 [NCBI] |
| BioProject | PRJEB50943 [NCBI] |
| Submitter | European Bioinformatics Institute |
| Submission Date | 2023-01-04T08:29:38.780 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CALAHJ01 |
| NCBI TaxID | 370804 |
| Isolation Source | metagenome |
| Geo Location | not provided |
