Genome Meta Information: Aggregatibacter sp. HMT-513 REFINED_METABAT215_SUBJECT_CONTIGS_1500_ASSEMBLY_K77_MERGED__Pilot_MoBio_Fiber_C_5_1018.152 (GCA_934234175.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_934234175.1 | ||
| HOMD Taxon-ID | HMT-513 | ||
| Species Name (in use by HOMD) | Aggregatibacter sp. HMT-513 | ||
| Organism Name (as deposited) | HMT-513 Aggregatibacter sp. HMT-513 REFINED_METABAT215_SUBJECT_CONTIGS_1500_ASSEMBLY_K77_MERGED__Pilot_MoBio_Fiber_C_5_1018.152 | ||
| Strain or Isolate | REFINED_METABAT215_SUBJECT_CONTIGS_1500_ASSEMBLY_K77_MERGED__Pilot_MoBio_Fiber_C_5_1018.152 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter segnis_A |
||
| Sequencing Technology | |||
| Genome Coverage | 44.0x | ||
| Contigs |
|
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| Total Sequence Length | 1,754,698 (bp) | ||
| GC Percentage | 42.7 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/234/175/GCA_934234175.1_ERR7738276_bin.152 | ||
| CDS | 1679 | ||
| Genes | 1747 | ||
| mRNA | 1747 | ||
| misc RNA | 26 | ||
| rRNA | 0 | ||
| tRNA | 41 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 88.86 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 87.88 % | ||
| CheckM2 Contamination | 0.03 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ERR7738276_bin.152 |
| GenBank Assembly Accession | GCA_934234175.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMEA13473755 [NCBI] |
| BioProject | PRJEB49206 [NCBI] |
| Submitter | stanford university school of medicine |
| Submission Date | 2022-04-02T09:49:10.426 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | CAKQGW01 |
| NCBI TaxID | 470564 |
| Isolation Source | human feces |
| Geo Location | USA |
