Genome Meta Information: Alistipes shahii MGYG-HGUT-00003 (GCA_902362205.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_902362205.1 | ||
| HOMD Taxon-ID | HMT-966 | ||
| Species Name (in use by HOMD) | Alistipes shahii | ||
| Organism Name (as deposited) | HMT-966 Alistipes shahii MGYG-HGUT-00003 | ||
| Strain or Isolate | MGYG-HGUT-00003 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes shahii |
||
| Sequencing Technology | |||
| Genome Coverage | 10.0x | ||
| Contigs |
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| Total Sequence Length | 3,234,232 (bp) | ||
| GC Percentage | 58.58 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/362/205/GCA_902362205.1_MGYG-HGUT-00003 | ||
| CDS | 2690 | ||
| Genes | 2758 | ||
| mRNA | 2758 | ||
| misc RNA | 15 | ||
| rRNA | 3 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 99.96 % | ||
| CheckM2 Contamination | 0.51 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | MGYG-HGUT-00003 |
| GenBank Assembly Accession | GCA_902362205.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_902362205.1 [NCBI] |
| BioSample | SAMEA5849504 [NCBI] |
| BioProject | PRJEB33885 [NCBI] |
| Submitter | EMG |
| Submission Date | 2019-08-07T10:17:07.836 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | CABIWH01 |
| NCBI TaxID | 2049048 |
| Isolation Source | human gut |
| Geo Location | United Kingdom |
