Genome Meta Information: Aggregatibacter aphrophilus NCTC5906 (GCA_900636915.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900636915.1 | ||
| HOMD Taxon-ID | HMT-545 | ||
| Species Name (in use by HOMD) | Aggregatibacter aphrophilus | ||
| Organism Name (as deposited) | HMT-545 Aggregatibacter aphrophilus NCTC5906 | ||
| Strain or Isolate | NCTC5906 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter aphrophilus |
||
| Sequencing Technology | |||
| Genome Coverage | 100.0x | ||
| Contigs |
|
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| Total Sequence Length | 2,337,153 (bp) | ||
| GC Percentage | 42.32 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/636/915/GCA_900636915.1_45532_F02 | ||
| CDS | 2165 | ||
| Genes | 2301 | ||
| mRNA | 2301 | ||
| misc RNA | 59 | ||
| rRNA | 19 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.89 % | ||
| CheckM Contamination | 0.02 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.13 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 45532_F02 |
| GenBank Assembly Accession | GCA_900636915.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900636915.1 [NCBI] |
| BioSample | SAMEA3919800 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2016-06-15T09:07:31.900 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 985008 |
| Isolation Source | not available: to be reported later |
| Geo Location | United Kingdom: London |
