Genome Meta Information: Alloiococcus otitis NCTC13840 (GCA_900445205.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_900445205.1 | ||
| HOMD Taxon-ID | HMT-831 | ||
| Species Name (in use by HOMD) | Alloiococcus otitis | ||
| Organism Name (as deposited) | HMT-831 Alloiococcus otitis NCTC13840 | ||
| Strain or Isolate | NCTC13840 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Alloiococcus; s__Alloiococcus otitis |
||
| Sequencing Technology | |||
| Genome Coverage | 100.0x | ||
| Contigs |
|
||
| Total Sequence Length | 1,875,153 (bp) | ||
| GC Percentage | 44.71 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/445/205/GCA_900445205.1_52223_B01 | ||
| CDS | 1732 | ||
| Genes | 1860 | ||
| mRNA | 1860 | ||
| misc RNA | 59 | ||
| rRNA | 14 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 97.28 % | ||
| CheckM Contamination | 1.09 % | ||
| CheckM2 Completeness | 97 % | ||
| CheckM2 Contamination | 0.75 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes (Beta) | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | 52223_B01 |
| GenBank Assembly Accession | GCA_900445205.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_900445205.1 [NCBI] |
| BioSample | SAMEA4535746 [NCBI] |
| BioProject | PRJEB6403 [NCBI] |
| Submitter | SC |
| Submission Date | 2017-05-05T08:08:06.926 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | UFSN01 |
| NCBI TaxID | 1652 |
| Isolation Source | Ear fluid |
| Geo Location | |
