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Genome Meta Information:
Actinomyces
oris
WVU371 (GCA_031292905.1)
| HOMD Genome-ID |
GCA_031292905.1
|
| HOMD Taxon-ID |
HMT-893
|
| Species Name (in use by HOMD) |
Actinomyces oris
|
| Organism Name (as deposited) |
HMT-893 Actinomyces oris clade-893 WVU371
|
| Strain or Isolate |
WVU371
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;
s__Actinomyces oris |
| Sequencing Technology |
Illumina HiSeq
|
| Genome Coverage |
378.0x
|
| Contigs |
Number of Contigs: 167
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
3,094,922 (bp) |
| GC Percentage |
68.67
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/031/292/905/GCA_031292905.1_ASM3129290v1
|
| CDS |
2597
|
| Genes |
2670
|
| mRNA |
2670
|
| misc RNA |
14
|
| rRNA |
4
|
| tRNA |
54
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
96.64 %
|
| CheckM Completeness |
99.53 %
|
| CheckM Contamination |
1.42 %
|
| CheckM2 Completeness |
99.97 %
|
| CheckM2 Contamination |
0.62 %
|
| CRISPR-cas |
2 Contigs
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM3129290v1
|
| GenBank Assembly Accession |
GCA_031292905.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_031292905.1
[NCBI]
|
| BioSample |
SAMN35360573
[NCBI]
|
| BioProject |
PRJNA976213
[NCBI]
|
| Submitter |
University of Malaya
|
| Submission Date |
2023-05-25T09:17:04.820
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JASPEQ01
|
| NCBI TaxID |
544580
|
| Isolation Source |
|
| Geo Location |
not applicable
|
