Genome Meta Information: Hoylesella nanceiensis RAGGC_60 (GCA_030826125.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030826125.1 | ||
| HOMD Taxon-ID | HMT-299 | ||
| Species Name (in use by HOMD) | Hoylesella nanceiensis | ||
| Organism Name (as deposited) | HMT-299 Hoylesella nanceiensis RAGGC_60 | ||
| Strain or Isolate | RAGGC_60 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella nanceiensis |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 20.7x | ||
| Contigs |
|
||
| Total Sequence Length | 2,440,093 (bp) | ||
| GC Percentage | 38.17 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/826/125/GCA_030826125.1_ASM3082612v1 | ||
| CDS | 1870 | ||
| Genes | 1916 | ||
| mRNA | 1916 | ||
| misc RNA | 5 | ||
| rRNA | 0 | ||
| tRNA | 40 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.84 % | ||
| CheckM Completeness | 99.32 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 99.91 % | ||
| CheckM2 Contamination | 0.02 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3082612v1 |
| GenBank Assembly Accession | GCA_030826125.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030826125.1 [NCBI] |
| BioSample | SAMN31428321 [NCBI] |
| BioProject | PRJNA872116 [NCBI] |
| Submitter | NHGRI/NIH |
| Submission Date | 2022-10-24T13:21:05.073 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAPJOP01 |
| NCBI TaxID | 425941 |
| Isolation Source | human skin |
| Geo Location | USA |
