Genome Meta Information: Abiotrophia sp. HMT-427 RAGGC_103 (GCA_030825925.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030825925.1 | ||
| HOMD Taxon-ID | HMT-427 | ||
| Species Name (in use by HOMD) | Abiotrophia sp. HMT-427 | ||
| Organism Name (as deposited) | HMT-427 Abiotrophia sp. HMT-427 RAGGC_103 | ||
| Strain or Isolate | RAGGC_103 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia; s__Abiotrophia sp001815865 |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 12.8x | ||
| Contigs |
|
||
| Total Sequence Length | 1,825,944 (bp) | ||
| GC Percentage | 46.85 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/825/925/GCA_030825925.1_ASM3082592v1 | ||
| CDS | 1667 | ||
| Genes | 1706 | ||
| mRNA | 1706 | ||
| misc RNA | 19 | ||
| rRNA | 0 | ||
| tRNA | 19 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.78 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 98.68 % | ||
| CheckM2 Contamination | 0.49 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes (Beta) |
View in Anvi`o:
Abiotrophia__sp_HMT_427__HMT_427
(Interactive)
View SVG Image |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3082592v1 |
| GenBank Assembly Accession | GCA_030825925.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030825925.1 [NCBI] |
| BioSample | SAMN31428331 [NCBI] |
| BioProject | PRJNA872116 [NCBI] |
| Submitter | NHGRI/NIH |
| Submission Date | 2022-10-24T13:21:05.183 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAPJOZ01 |
| NCBI TaxID | 76631 |
| Isolation Source | human skin |
| Geo Location | USA |
