Genome Meta Information: Anaerococcus octavius RAGGC_152 (GCA_030825475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030825475.1 | ||
| HOMD Taxon-ID | HMT-017 | ||
| Species Name (in use by HOMD) | Anaerococcus octavius | ||
| Organism Name (as deposited) | HMT-017 Anaerococcus octavius RAGGC_152 | ||
| Strain or Isolate | RAGGC_152 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus; s__Anaerococcus octavius |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 73.0x | ||
| Contigs |
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| Total Sequence Length | 1,719,998 (bp) | ||
| GC Percentage | 30.5 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/825/475/GCA_030825475.1_ASM3082547v1 | ||
| CDS | 1630 | ||
| Genes | 1681 | ||
| mRNA | 1681 | ||
| misc RNA | 19 | ||
| rRNA | 0 | ||
| tRNA | 31 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.79 % | ||
| CheckM Completeness | 98.78 % | ||
| CheckM Contamination | 0.91 % | ||
| CheckM2 Completeness | 92.92 % | ||
| CheckM2 Contamination | 0.09 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3082547v1 |
| GenBank Assembly Accession | GCA_030825475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030825475.1 [NCBI] |
| BioSample | SAMN31428354 [NCBI] |
| BioProject | PRJNA872116 [NCBI] |
| Submitter | NHGRI/NIH |
| Submission Date | 2022-10-24T13:21:05.420 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAPJPW01 |
| NCBI TaxID | 54007 |
| Isolation Source | human skin |
| Geo Location | USA |
