Genome Meta Information: Corynebacterium gottingense DSM 108986 (GCA_030408875.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030408875.1 | ||
| HOMD Taxon-ID | HMT-207 | ||
| Species Name (in use by HOMD) | Corynebacterium gottingense | ||
| Organism Name (as deposited) | HMT-207 Corynebacterium gottingense DSM 108986 | ||
| Strain or Isolate | DSM 108986 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium gottingense |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore GridION | ||
| Genome Coverage | 76.5x | ||
| Contigs |
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| Total Sequence Length | 2,612,809 (bp) | ||
| GC Percentage | 65.36 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/408/875/GCA_030408875.1_ASM3040887v1 | ||
| CDS | 2341 | ||
| Genes | 2419 | ||
| mRNA | 2419 | ||
| misc RNA | 10 | ||
| rRNA | 12 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.96 % | ||
| CheckM Completeness | 99.34 % | ||
| CheckM Contamination | 0.22 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.02 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3040887v1 |
| GenBank Assembly Accession | GCA_030408875.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030408875.1 [NCBI] |
| BioSample | SAMN13404526 [NCBI] |
| BioProject | PRJNA515398 [NCBI] |
| Submitter | Bielefeld University |
| Submission Date | 2019-11-27T05:40:30.700 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2041036 |
| Isolation Source | blood of a patient with bacteraemia of unknown origin |
| Geo Location | Germany: Goettingen |
