Genome Meta Information: Actinomyces israelii F0345 (GCA_030253495.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030253495.1 | ||
| HOMD Taxon-ID | HMT-645 | ||
| Species Name (in use by HOMD) | Actinomyces israelii | ||
| Organism Name (as deposited) | HMT-645 Actinomyces israelii F0345 | ||
| Strain or Isolate | F0345 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces israelii |
||
| Sequencing Technology | Illumina; Oxford Nanopore MinION | ||
| Genome Coverage | 66.0x | ||
| Contigs |
|
||
| Total Sequence Length | 3,980,311 (bp) | ||
| GC Percentage | 71.5 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/253/495/GCA_030253495.1_ASM3025349v1 | ||
| CDS | 3248 | ||
| Genes | 3330 | ||
| mRNA | 3330 | ||
| misc RNA | 18 | ||
| rRNA | 6 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.52 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 1.72 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.83 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3025349v1 |
| GenBank Assembly Accession | GCA_030253495.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030253495.1 [NCBI] |
| BioSample | SAMN34266293 [NCBI] |
| BioProject | PRJNA957798 [NCBI] |
| Submitter | University of Washington, Mougous Lab |
| Submission Date | 2023-04-20T15:27:03.677 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1659 |
| Isolation Source | human oral cavity |
| Geo Location | missing |
