Genome Meta Information: Corynebacterium pseudodiphtheriticum MSK118 (GCA_030232785.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030232785.1 | ||
| HOMD Taxon-ID | HMT-060 | ||
| Species Name (in use by HOMD) | Corynebacterium pseudodiphtheriticum | ||
| Organism Name (as deposited) | HMT-060 Corynebacterium pseudodiphtheriticum MSK118 | ||
| Strain or Isolate | MSK118 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium pseudodiphtheriticum |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 109.0x | ||
| Contigs |
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| Total Sequence Length | 2,307,282 (bp) | ||
| GC Percentage | 55.36 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/232/785/GCA_030232785.1_ASM3023278v1 | ||
| CDS | 2101 | ||
| Genes | 2158 | ||
| mRNA | 2158 | ||
| misc RNA | 6 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.1 % | ||
| CheckM Completeness | 99.67 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 99.99 % | ||
| CheckM2 Contamination | 0.02 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3023278v1 |
| GenBank Assembly Accession | GCA_030232785.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030232785.1 [NCBI] |
| BioSample | SAMN35346735 [NCBI] |
| BioProject | PRJNA804245 [NCBI] |
| Submitter | Duke University |
| Submission Date | 2023-05-24T14:12:06.157 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JASPHX01 |
| NCBI TaxID | 37637 |
| Isolation Source | nasopharyngeal swab |
| Geo Location | Botswana: Gaborone |
