Genome Meta Information: Alloscardovia omnicolens UMB1308A (GCA_030230475.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030230475.1 | ||
| HOMD Taxon-ID | HMT-198 | ||
| Species Name (in use by HOMD) | Alloscardovia omnicolens | ||
| Organism Name (as deposited) | HMT-198 Alloscardovia omnicolens UMB1308A | ||
| Strain or Isolate | UMB1308A | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia; s__Alloscardovia omnicolens |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 381.8x | ||
| Contigs |
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| Total Sequence Length | 1,799,614 (bp) | ||
| GC Percentage | 46.83 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/230/475/GCA_030230475.1_ASM3023047v1 | ||
| CDS | 1490 | ||
| Genes | 1546 | ||
| mRNA | 1546 | ||
| misc RNA | 10 | ||
| rRNA | 0 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.57 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 97.52 % | ||
| CheckM2 Contamination | 0.07 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3023047v1 |
| GenBank Assembly Accession | GCA_030230475.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030230475.1 [NCBI] |
| BioSample | SAMN35153877 [NCBI] |
| BioProject | PRJNA970254 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2023-05-18T09:46:07.166 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JASPDP01 |
| NCBI TaxID | 419015 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
