Genome Meta Information: Alloscardovia omnicolens UMB9969 (GCA_030226025.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_030226025.1 | ||
| HOMD Taxon-ID | HMT-198 | ||
| Species Name (in use by HOMD) | Alloscardovia omnicolens | ||
| Organism Name (as deposited) | HMT-198 Alloscardovia omnicolens UMB9969 | ||
| Strain or Isolate | UMB9969 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia; s__Alloscardovia omnicolens |
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| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 334.8x | ||
| Contigs |
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| Total Sequence Length | 1,787,092 (bp) | ||
| GC Percentage | 46.89 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/030/226/025/GCA_030226025.1_ASM3022602v1 | ||
| CDS | 1498 | ||
| Genes | 1559 | ||
| mRNA | 1559 | ||
| misc RNA | 11 | ||
| rRNA | 2 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.62 % | ||
| CheckM Completeness | 99.94 % | ||
| CheckM Contamination | 0.23 % | ||
| CheckM2 Completeness | 96.89 % | ||
| CheckM2 Contamination | 0.04 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP Site] | ||
| Pangenomes (Beta) |
View in Anvi`o:
Alloscardovia__omnicolens__HMT_198
(Interactive)
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| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM3022602v1 |
| GenBank Assembly Accession | GCA_030226025.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_030226025.1 [NCBI] |
| BioSample | SAMN34998709 [NCBI] |
| BioProject | PRJNA970254 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2023-05-08T14:01:08.427 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JASOXA01 |
| NCBI TaxID | 419015 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
