Genome Meta Information: Arthrospira platensis NIES-39 (GCA_026000695.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_026000695.2 | ||
| HOMD Taxon-ID | HMT-229 | ||
| Species Name (in use by HOMD) | Arthrospira platensis | ||
| Organism Name (as deposited) | HMT-229 Arthrospira platensis NIES-39 | ||
| Strain or Isolate | NIES-39 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Cyanobacteriota;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Limnospira; s__Limnospira platensis |
||
| Sequencing Technology | PacBio Sequel IIe, Illumina HiSeq/Nova, and Sanger sequencing | ||
| Genome Coverage | 36.0x | ||
| Contigs |
|
||
| Total Sequence Length | 6,818,856 (bp) | ||
| GC Percentage | 44.3 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/000/695/GCA_026000695.2_ASM2600069v2 | ||
| CDS | 6385 | ||
| Genes | 6846 | ||
| mRNA | 6846 | ||
| misc RNA | 408 | ||
| rRNA | 4 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.63 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.22 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.1 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2600069v2 |
| GenBank Assembly Accession | GCA_026000695.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMD00536037 [NCBI] |
| BioProject | PRJDB14339 [NCBI] |
| Submitter | Laboratory of Gene Biodynamics, Graduate School of Biostudies, Kyoto University |
| Submission Date | 2022-10-25T15:05:42.867 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 696747 |
| Isolation Source | |
| Geo Location | Chad:Lake Chad |
