Genome Meta Information: Alistipes onderdonkii DSM 19147 (GCA_025145285.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_025145285.1 | ||
| HOMD Taxon-ID | HMT-964 | ||
| Species Name (in use by HOMD) | Alistipes onderdonkii | ||
| Organism Name (as deposited) | HMT-964 Alistipes onderdonkii DSM 19147 | ||
| Strain or Isolate | DSM 19147 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes onderdonkii |
||
| Sequencing Technology | Illumina HiSeq; Oxford Nanopore | ||
| Genome Coverage | 100.0x | ||
| Contigs |
|
||
| Total Sequence Length | 3,869,542 (bp) | ||
| GC Percentage | 57.81 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/145/285/GCA_025145285.1_ASM2514528v1 | ||
| CDS | 3152 | ||
| Genes | 3223 | ||
| mRNA | 3223 | ||
| misc RNA | 19 | ||
| rRNA | 6 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.28 % | ||
| CheckM Contamination | 0.48 % | ||
| CheckM2 Completeness | 99.99 % | ||
| CheckM2 Contamination | 0.51 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes (Beta) | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2514528v1 |
| GenBank Assembly Accession | GCA_025145285.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_025145285.1 [NCBI] |
| BioSample | SAMN20222635 [NCBI] |
| BioProject | PRJNA746600 [NCBI] |
| Submitter | Stanford University |
| Submission Date | 2021-07-14T17:26:19.196 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 328813 |
| Isolation Source | |
| Geo Location | not applicable |
