Genome Meta Information: Aggregatibacter actinomycetemcomitans 20R (GCA_024677985.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024677985.1 | ||
| HOMD Taxon-ID | HMT-531 | ||
| Species Name (in use by HOMD) | Aggregatibacter actinomycetemcomitans | ||
| Organism Name (as deposited) | HMT-531 Aggregatibacter actinomycetemcomitans 20R | ||
| Strain or Isolate | 20R | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans |
||
| Sequencing Technology | Illumina MiSeq +Oxford Nanopore | ||
| Genome Coverage | 183.7x | ||
| Contigs |
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| Total Sequence Length | 2,382,298 (bp) | ||
| GC Percentage | 44.26 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/677/985/GCA_024677985.1_ASM2467798v1 | ||
| CDS | 2286 | ||
| Genes | 2541 | ||
| mRNA | 2541 | ||
| misc RNA | 180 | ||
| rRNA | 19 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.81 % | ||
| CheckM Completeness | 99.66 % | ||
| CheckM Contamination | 0.3 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.11 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2467798v1 |
| GenBank Assembly Accession | GCA_024677985.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024677985.1 [NCBI] |
| BioSample | SAMN23845305 [NCBI] |
| BioProject | PRJNA787784 [NCBI] |
| Submitter | University of Groningen, University Medical Center Groningen |
| Submission Date | 2021-12-10T08:35:04.707 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JALDMW01 |
| NCBI TaxID | 714 |
| Isolation Source | Dept of Medical Microbiology, University Medical Center Groningen |
| Geo Location | Netherlands |
