Genome Meta Information: Alistipes putredinis DFI.6.33 (GCA_024462435.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_024462435.1 | ||
| HOMD Taxon-ID | HMT-965 | ||
| Species Name (in use by HOMD) | Alistipes putredinis | ||
| Organism Name (as deposited) | HMT-965 Alistipes putredinis DFI.6.33 | ||
| Strain or Isolate | DFI.6.33 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes putredinis |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 100.0x | ||
| Contigs |
|
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| Total Sequence Length | 2,777,827 (bp) | ||
| GC Percentage | 53.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/462/435/GCA_024462435.1_ASM2446243v1 | ||
| CDS | 2520 | ||
| Genes | 2596 | ||
| mRNA | 2596 | ||
| misc RNA | 20 | ||
| rRNA | 4 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.9 % | ||
| CheckM Completeness | 99.52 % | ||
| CheckM Contamination | 1.44 % | ||
| CheckM2 Completeness | 99.99 % | ||
| CheckM2 Contamination | 1.16 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes (Beta) | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM2446243v1 |
| GenBank Assembly Accession | GCA_024462435.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_024462435.1 [NCBI] |
| BioSample | SAMN28944535 [NCBI] |
| BioProject | PRJNA792599 [NCBI] |
| Submitter | University of Chicago |
| Submission Date | 2022-06-09T14:20:06.790 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JANGBM01 |
| NCBI TaxID | 28117 |
| Isolation Source | fecal sample |
| Geo Location | USA:Chicago |
