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Genome Meta Information:
Alistipes
putredinis
DFI.6.34 (GCA_024462405.1)
| HOMD Genome-ID |
GCA_024462405.1
|
| HOMD Taxon-ID |
HMT-965
|
| Species Name (in use by HOMD) |
Alistipes putredinis
|
| Organism Name (as deposited) |
HMT-965 Alistipes putredinis DFI.6.34
|
| Strain or Isolate |
DFI.6.34
|
GTDB (V)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;
s__Alistipes putredinis |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
100.0x
|
| Contigs |
Number of Contigs: 265
|
[Open
in Genome Viewer]
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Sequence]
[Linkout to
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|
|
| Total Sequence Length |
2,806,976 (bp) |
| GC Percentage |
53.67
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/462/405/GCA_024462405.1_ASM2446240v1
|
| CDS |
2525
|
| Genes |
2599
|
| mRNA |
2599
|
| misc RNA |
18
|
| rRNA |
4
|
| tRNA |
51
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.9 %
|
| CheckM Completeness |
99.52 %
|
| CheckM Contamination |
2.26 %
|
| CheckM2 Completeness |
99.99 %
|
| CheckM2 Contamination |
2.09 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM2446240v1
|
| GenBank Assembly Accession |
GCA_024462405.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_024462405.1
[NCBI]
|
| BioSample |
SAMN28944536
[NCBI]
|
| BioProject |
PRJNA792599
[NCBI]
|
| Submitter |
University of Chicago
|
| Submission Date |
2022-06-09T14:20:06.803
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JANGBL01
|
| NCBI TaxID |
28117
|
| Isolation Source |
fecal sample
|
| Geo Location |
USA:Chicago
|
