Genome Meta Information: Arachnia rubra SK-1 (GCA_019973735.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_019973735.1 | ||
| HOMD Taxon-ID | HMT-194 | ||
| Species Name (in use by HOMD) | Arachnia rubra | ||
| Organism Name (as deposited) | HMT-194 Arachnia rubra SK-1 | ||
| Strain or Isolate | SK-1 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia; s__Arachnia rubra |
||
| Sequencing Technology | Sequel II | ||
| Genome Coverage | 808.0x | ||
| Contigs |
|
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| Total Sequence Length | 3,316,972 (bp) | ||
| GC Percentage | 64.2 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/973/735/GCA_019973735.1_ASM1997373v1 | ||
| CDS | 3000 | ||
| Genes | 3076 | ||
| mRNA | 3076 | ||
| misc RNA | 19 | ||
| rRNA | 6 | ||
| tRNA | 49 | ||
| tmRNA | 2 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 96.42 % | ||
| CheckM Contamination | 1.22 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 1.1 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1997373v1 |
| GenBank Assembly Accession | GCA_019973735.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_019973735.1 [NCBI] |
| BioSample | SAMD00270488 [NCBI] |
| BioProject | PRJDB11022 [NCBI] |
| Submitter | Nihon University School of Dentistry at Matsudo |
| Submission Date | 2021-09-08T14:06:19.550 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1547448 |
| Isolation Source | |
| Geo Location | Japan:Chiba, Matsudo, Sakaecho |
