Genome Meta Information: Alistipes putredinis MCC001 (GCA_018786185.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_018786185.1 | ||
| HOMD Taxon-ID | HMT-965 | ||
| Species Name (in use by HOMD) | Alistipes putredinis | ||
| Organism Name (as deposited) | HMT-965 Alistipes putredinis MCC001 | ||
| Strain or Isolate | MCC001 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes; s__Alistipes putredinis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 248.8x | ||
| Contigs |
|
||
| Total Sequence Length | 2,622,641 (bp) | ||
| GC Percentage | 53.14 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/786/185/GCA_018786185.1_ASM1878618v1 | ||
| CDS | 2378 | ||
| Genes | 2445 | ||
| mRNA | 2445 | ||
| misc RNA | 16 | ||
| rRNA | 3 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.13 % | ||
| CheckM Completeness | 99.52 % | ||
| CheckM Contamination | 0.96 % | ||
| CheckM2 Completeness | 99.99 % | ||
| CheckM2 Contamination | 0.43 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes (Beta) | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1878618v1 |
| GenBank Assembly Accession | GCA_018786185.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_018786185.1 [NCBI] |
| BioSample | SAMN12147335 [NCBI] |
| BioProject | PRJNA548918 [NCBI] |
| Submitter | University College Cork |
| Submission Date | 2019-06-27T09:12:25.740 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | WQRD01 |
| NCBI TaxID | 28117 |
| Isolation Source | feces |
| Geo Location | Ireland |
